miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51562_pta-miR319:pmrd
Length = 206
Score = 387 bits (195), Expect = e-108
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 1 ggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgca 67
Query: 61 caccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 caccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcacg 127
Query: 121 gacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttgg 187
Query: 181 actgaagggagctcc 195
|||||||||||||||
Sbjct: 188 actgaagggagctcc 202
>51553_pta-miR159a:pmrd
Length = 210
Score = 387 bits (195), Expect = e-108
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgca 144
Query: 61 caccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcacg 84
Query: 121 gacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttgg 24
Query: 181 actgaagggagctcc 195
|||||||||||||||
Sbjct: 23 actgaagggagctcc 9
>51547_psi-miR159:pmrd
Length = 193
Score = 266 bits (134), Expect = 6e-72
Identities = 180/195 (92%), Gaps = 4/195 (2%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgca 60
|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct: 192 ggagctcccttcaatccaaggaatgcgtgtccagtgacaatacatctcctgcgtcatgca 133
Query: 61 caccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcacg 120
|||||||||||||||||| || | |||||||||||| |||||||||||| |||||||
Sbjct: 132 caccactatcctgtcatggagatagattgattgatt----caggctgctggaaagtcacg 77
Query: 121 gacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttgg 180
||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 gacagggcagtcgaatgcatgaatcagcagctgaaccaccgccgcacaagctttggttgg 17
Query: 181 actgaagggagctcc 195
|||||||||||||||
Sbjct: 16 actgaagggagctcc 2
>51605_ptc-miR159d:pmrd
Length = 194
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaagaaa 23
|||||||||||||||||||||||
Sbjct: 184 ggagctcccttcaatccaagaaa 162
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 157 ctttgattggactgaagggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 156 ctttgattggactgaagggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 156 ctttgattggactgaagggagctcc 180
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 43 ctttgattggactgaagggagctcc 19
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 148 ctttgattggactgaagggagctcc 172
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 ctttggttggactgaagggagctcc 195
||||| |||||||||||||||||||
Sbjct: 154 ctttgattggactgaagggagctcc 178
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 177 ggagctcccttcaatccaag 158
>54936_zma-miR159g:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 178 ggagctcccttcaatccaag 159
>54935_zma-miR159f:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 179 ggagctcccttcaatccaag 160
>54933_zma-miR159d:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 197 ggagctcccttcaatccaag 178
>54932_zma-miR159c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 197 ggagctcccttcaatccaag 178
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 175 ggagctcccttcaatccaag 156
>54630_sof-miR159c:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 218 ggagctcccttcaatccaag 199
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 268 ggagctcccttcaatccaag 249
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 gagctcccttcaatccaagaaatg 25
|||||||||||||||||| |||||
Sbjct: 175 gagctcccttcaatccaaaaaatg 152
>54403_sbi-miR159b:pmrd
Length = 253
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 233 ggagctcccttcaatccaag 214
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ggagctcccttcaatccaag 20
||||||||||||||||||||
Sbjct: 68 ggagctcccttcaatccaag 49
