miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctccactccacctgcggcaggaggctcttcttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tagccaaggatgacttgcctgtggcctccactccacctgcggcaggaggctcttcttctg 69
Query: 61 cgcgcgcgtgtgtgtgtggttgtcgatcgcaggcagtctccttggcta 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cgcgcgcgtgtgtgtgtggttgtcgatcgcaggcagtctccttggcta 21
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 214 bits (108), Expect = 2e-55
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctccactccacctgcggcaggaggctcttcttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctgtggcctccactccacctgcggcaggaggctcttcttctg 75
Query: 61 cgcgcgcgtgtgtgtgtggttgtcgatcgcaggcagtctccttggcta 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 cgcgcgcgtgtgtgtgtggttgtcgatcgcaggcagtctccttggcta 123
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 75 tgtggttgtcgatcgcaggcagtctccttggcta 108
||||||||||||||||||||||||||||||||||
Sbjct: 54 tgtggttgtcgatcgcaggcagtctccttggcta 21
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctcca 30
||||||||||||||||||||||||||||||
Sbjct: 113 tagccaaggatgacttgcctgtggcctcca 84
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 75 tgtggttgtcgatcgcaggcagtctccttggcta 108
||||||||||||||||||||||||||||||||||
Sbjct: 73 tgtggttgtcgatcgcaggcagtctccttggcta 106
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctcca 30
||||||||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtggcctcca 43
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctc 28
||||||||||||||||||||||||||||
Sbjct: 133 tagccaaggatgacttgcctgtggcctc 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 83 tcgatcgcaggcagtctccttggcta 108
|||||| |||||||||||||||||||
Sbjct: 46 tcgatcacaggcagtctccttggcta 21
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctc 28
||||||||||||||||||||||||||||
Sbjct: 155 tagccaaggatgacttgcctgtggcctc 128
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctc 28
||||||||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgtggcctc 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tcgatcgcaggcagtctccttggcta 108
|||||| |||||||||||||||||||
Sbjct: 100 tcgatcacaggcagtctccttggcta 125
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctc 28
||||||||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgtggcctc 40
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggc 25
|||||||||||||||||||||||||
Sbjct: 134 tagccaaggatgacttgcctgtggc 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 83 tcgatcgcaggcagtctccttggcta 108
|||||| |||||||||||||||||||
Sbjct: 48 tcgatcacaggcagtctccttggcta 23
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctcc 29
||||||||||||||||||||||| |||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctcc 80
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctcc 29
|||||||||||||||||||||| ||||||
Sbjct: 13 tagccaaggatgacttgcctgtagcctcc 41
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctcc 29
||||||||||||||||||||||| |||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctcc 38
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctgtggc 25
||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtggc 24
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tcgatcgcaggcagtctccttggcta 108
|||||| |||||||||||||||||||
Sbjct: 86 tcgatcacaggcagtctccttggcta 111
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgtg 86
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctgtg 99
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgcctgtg 102
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 10 tagccaaggatgacttgcctgtg 32
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgtg 31
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcc 26
||||||||||||||||||||| ||||
Sbjct: 132 tagccaaggatgacttgcctgaggcc 107
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;ABXC01001464.1/182397-182247 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtggcctcca 30
||||||||||||| |||||||||||||||
Sbjct: 131 tagccaaggatgagctgcctgtggcctcca 102
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgt 116
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcc 26
||||||||||||||||||||| ||||
Sbjct: 13 tagccaaggatgacttgcctgaggcc 38
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;ABXC01001464.1/182253-182392 4558:Sorghum
bicolor (sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtggcctcca 30
||||||||||||| |||||||||||||||
Sbjct: 15 tagccaaggatgagctgcctgtggcctcca 44
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
