miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atttttctgcatttgcacctgcacctt 35
|||| ||||||||||||||||||||||
Sbjct: 10 atttatctgcatttgcacctgcacctt 36
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tctgcatttgcacctgcacctt 35
||||||||||||||||||||||
Sbjct: 19 tctgcatttgcacctgcacctt 40
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tctgcatttgcacctgcacctt 35
||||||||||||||||||||||
Sbjct: 19 tctgcatttgcacctgcacctt 40
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tctgcatttgcacctgcacctt 35
||||||||||||||||||||||
Sbjct: 19 tctgcatttgcacctgcacctt 40
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tctgcatttgcacctgcacctt 35
||||||||||||||||||||||
Sbjct: 19 tctgcatttgcacctgcacctt 40
