miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 184 bits (93), Expect = 3e-46
Identities = 159/179 (88%), Gaps = 9/179 (5%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 tcccacagccctatctcataataaagactctagtcttcttggataggcttgtggcttgca 120
|||||||||||||| | | ||| | || | ||||||||||||||||||||||
Sbjct: 72 tcccacagccctat----aagcagagattata---attttggataggcttgtggcttgca 124
Query: 121 tatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctct 179
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 125 tatctcaggagcttcattac--cttgtattagatccttgtttggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 125 bits (63), Expect = 2e-28
Identities = 153/180 (85%), Gaps = 11/180 (6%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 tcccacagccctatctcat-aataaagactctagtcttcttggataggcttgtggcttgc 119
||||||||||||||| | | ||| | | | |||||||||||||||||||||
Sbjct: 72 tcccacagccctatcccgtcaatgggg------ggc--attggataggcttgtggcttgc 123
Query: 120 atatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctct 179
|||||||||||||| ||||| || | |||||||||||||||||||||||||||||||
Sbjct: 124 atatctcaggagctgcatta--tccaagtttagatccttgtttggattgaagggagctct 181
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 61
|||||||||||||||||||||| | || |||||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 62 cccacagccctatc 75
||||||||||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 8e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 2 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 61
|||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 cccacagcccta 73
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 103 bits (52), Expect = 8e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgga 60
||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga 71
Query: 61 tcccacagccctatct 76
| |||||| |||||||
Sbjct: 72 t-ccacagtcctatct 86
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 79.8 bits (40), Expect = 1e-14
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 1 ggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgga 60
||||||||||||||||||| ||| ||||| | || |||||||||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 tcccacagccctatct 76
| || |||||||||||
Sbjct: 72 ttcctcagccctatct 87
