miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 180 bits (91), Expect = 2e-45
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaaattatcggtatggttcaaaaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 112 aagcttgagacaacaactgcacaacttgcaagaaaattatcggtatggttcgaaaaccaa 53
Query: 61 ttttcttgcaagatatgcagttgctgcctctagct 95
|||||||||||||||||||||||||||||||||||
Sbjct: 52 ttttcttgcaagatatgcagttgctgcctctagct 18
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 127 bits (64), Expect = 3e-29
Identities = 88/96 (91%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaaattatcggtatggttcaaaaaccaa 60
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |
Sbjct: 112 aagcttgagacaacaactgcacagcttgcaagaaaatcatcggtatggccataaaaccga 53
Query: 61 ttttcttgcaagatatgcagttgctgcctctagctt 96
|||||||||||||||||||||||||| |||||||||
Sbjct: 52 ttttcttgcaagatatgcagttgctgtctctagctt 17
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 101 bits (51), Expect = 2e-21
Identities = 87/98 (88%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaaattatcggtatggttcaaaaaccaa 60
||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |
Sbjct: 114 aagcttgagacaacaactgcacaacttgcaagaaaatcatcggtacgtcaacaaaaccga 55
Query: 61 --ttttcttgcaagatatgcagttgctgcctctagctt 96
|||||||||||| |||||||||||||||||||||||
Sbjct: 54 ttttttcttgcaaggtatgcagttgctgcctctagctt 17
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaa 35
||||||||| |||||||||||||||||||||||||
Sbjct: 223 aagcttgaggcaacaactgcacaacttgcaagaaa 189
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaa 35
||||||||| |||||||||||||||||||||||||
Sbjct: 151 aagcttgaggcaacaactgcacaacttgcaagaaa 117
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaa 35
||||||||| |||||||||||||||||||||||||
Sbjct: 149 aagcttgaggcaacaactgcacaacttgcaagaaa 115
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaaattatcggtatg 47
||||||||| || |||||||| |||||||||||| || |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaagaatatcatcggtatg 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 63 ttcttgcaagatatgcagttgctgcctctagctt 96
|||||||||| ||||||||||||||||| |||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagctt 113
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 64 tcttgcaagatatgcagttgctgcctctagctt 96
||||||||| ||||||||||||||||| |||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagctt 113
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 aagcttgagacaacaactgcacaacttgcaagaaa 35
||||||||| || ||||||||| ||||||||||||
Sbjct: 157 aagcttgaggcagcaactgcacgacttgcaagaaa 123
