miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
||||||||||||||||||||||||||
Sbjct: 104 agtgtcgtcggaccaggcttcattcc 129
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
||||||||||||||||||||||||||
Sbjct: 90 agtgtcgtcggaccaggcttcattcc 115
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
||||||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattcc 126
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcac 25
|||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcac 32
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcac 25
|||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcac 32
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
|||| |||||||||||||||||||||
Sbjct: 89 agtgacgtcggaccaggcttcattcc 114
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcac 25
|||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtcac 32
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
||||| ||||||||||||||||||||
Sbjct: 116 agtgttgtcggaccaggcttcattcc 141
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtcac 25
|||||||||||||||||||||||||
Sbjct: 6 ggaatgttgtctggctcgaggtcac 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 agtgtcgtcggaccaggcttcattcc 149
||||| ||||||||||||||||||||
Sbjct: 155 agtgttgtcggaccaggcttcattcc 180
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 125 gtgtcgtcggaccaggcttcattcc 149
|||||||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattcc 149
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 125 gtgtcgtcggaccaggcttcattcc 149
|||||||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattcc 143
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggtca 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 127 gtcgtcggaccaggcttcattcc 149
|||||||||||||||||||||||
Sbjct: 96 gtcgtcggaccaggcttcattcc 118
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 123 aagtgtcgtcggaccaggcttcattcc 149
|||||| ||||||||||||||||||||
Sbjct: 80 aagtgttgtcggaccaggcttcattcc 106
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggctcgaggt 22
||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggctcgaggt 29
