miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 7 atggactacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctc 66
|||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||
Sbjct: 119 atggactacatacggatgtatatagacatactttagagtgtacattcaatcattttgctc 60
Query: 67 cgtatgt 73
|||||||
Sbjct: 59 cgtatgt 53
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 6 tatggactacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgct 65
||||||||||||||||||| |||||||| || | ||||||||| | |||||| |||||||
Sbjct: 123 tatggactacatacggatgaatatagacgtattttagagtgtagattcactcattttgct 64
Query: 66 ccgtatgttgtcc 78
|||||||| ||||
Sbjct: 63 ccgtatgtagtcc 51
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 69.9 bits (35), Expect = 5e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 11 actacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctccgta 70
|||||||||||||||| ||||||||| | |||||| || | |||||| ||||||||||||
Sbjct: 49 actacatacggatgtacatagacatattttagagtatagattcactcattttgctccgta 108
Query: 71 tgt 73
|||
Sbjct: 109 tgt 111
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 65.9 bits (33), Expect = 8e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 9 ggactacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctccg 68
|||||||||||||||||||||||||||||| |||||| | | |||||| |||||||||
Sbjct: 118 ggactacatacggatgtatatagacatact-tagagtacagattcactcattttgctcca 60
Query: 69 tatgt 73
|||||
Sbjct: 59 tatgt 55
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 gactacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctccgt 69
|||||||| |||||||||||||||||| | |||| | || | |||||| |||||||||||
Sbjct: 49 gactacattcggatgtatatagacatattttagaatatagattcactcattttgctccgt 108
Query: 70 atgt 73
||||
Sbjct: 109 atgt 112
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 11 actacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctccgta 70
|||||||||||||||| ||||||||| | |||||| || | || ||| ||||||||||||
Sbjct: 52 actacatacggatgtacatagacatattttagagtatagattcgctcattttgctccgta 111
Query: 71 tgt 73
|||
Sbjct: 112 tgt 114
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 3 cactatggactacatacggatgtatatagacata 36
||||||| ||||||||||||||||||||||||||
Sbjct: 126 cactatgaactacatacggatgtatatagacata 93
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 tggactacatacggatgtatatagacata 36
||||||| |||||||||||||||||||||
Sbjct: 51 tggactatatacggatgtatatagacata 79
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 46.1 bits (23), Expect = 7e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 11 actacatacggatgtatatagacatactgtagagtgtacaatcactcgttttgctccgta 70
||||||||||||||||| ||| |||| | | | |||| | |||||| ||||||||||||
Sbjct: 50 actacatacggatgtatgtagtcatattttgggatgtaaattcactcattttgctccgta 109
Query: 71 tgt 73
|||
Sbjct: 110 tgt 112
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3 cactatggactacatacggatgtatataga 32
|||||||||| |||||||||||||| ||||
Sbjct: 123 cactatggaccacatacggatgtatgtaga 94
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3 cactatggactacatacggatgtatataga 32
|||| ||||| |||||||||||||||||||
Sbjct: 125 cactgtggaccacatacggatgtatataga 96
