miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
          Length = 96

 Score =  123 bits (62), Expect = 4e-28
 Identities = 80/86 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggggaatgctggctggctcgaagcttaagcaaagagtatcctaacatgaaacaactgtta 60
          |||||||| |||||||||||||||||||||||||||| | ||  || |||||||||||||
Sbjct: 6  ggggaatgttggctggctcgaagcttaagcaaagagttttctctcaagaaacaactgtta 65

                                    
Query: 61 aggcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||||
Sbjct: 66 aggcttcggaccaggcttcattcccc 91




>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 59  taaggcttcggaccaggcttcattcccc 86
           ||||||||||||||||||||||||||||
Sbjct: 74  taaggcttcggaccaggcttcattcccc 101




>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
          Length = 123

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 59  taaggcttcggaccaggcttcattcccc 86
           ||||||||||||||||||||||||||||
Sbjct: 91  taaggcttcggaccaggcttcattcccc 118




>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
          (papaya)
          Length = 100

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 60 aaggcttcggaccaggcttcattcccc 86
          |||||||||||||||||||||||||||
Sbjct: 69 aaggcttcggaccaggcttcattcccc 95




>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
          (sorghum)
          Length = 82

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 62 ggcttcggaccaggcttcattcccc 86
          |||||||||||||||||||||||||
Sbjct: 53 ggcttcggaccaggcttcattcccc 77




>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
          Japonica Group
          Length = 77

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 62 ggcttcggaccaggcttcattcccc 86
          |||||||||||||||||||||||||
Sbjct: 48 ggcttcggaccaggcttcattcccc 72




>RF00075;mir-166;ABEU01002839.1/114707-114612
          145481:Physcomitrella patens subsp. patens
          Length = 96

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 58 ttaaggcttcggaccaggcttcattcccc 86
          |||| ||||||||||||||||||||||||
Sbjct: 63 ttaaagcttcggaccaggcttcattcccc 91




>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
          patens subsp. patens
          Length = 85

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 58 ttaaggcttcggaccaggcttcattcccc 86
          |||| ||||||||||||||||||||||||
Sbjct: 52 ttaaagcttcggaccaggcttcattcccc 80




>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 63 gcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||
Sbjct: 62 gcttcggaccaggcttcattcccc 85




>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
          patens subsp. patens
          Length = 95

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 63 gcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcccc 90




>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
          patens subsp. patens
          Length = 95

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 63 gcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcccc 90




>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
          patens subsp. patens
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 63 gcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||
Sbjct: 52 gcttcggaccaggcttcattcccc 75




>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
          patens subsp. patens
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 63 gcttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||||
Sbjct: 49 gcttcggaccaggcttcattcccc 72




>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
           cress)
          Length = 146

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 64  cttcggaccaggcttcattcccc 86
           |||||||||||||||||||||||
Sbjct: 119 cttcggaccaggcttcattcccc 141




>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
           (barrel medic)
          Length = 189

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 64  cttcggaccaggcttcattcccc 86
           |||||||||||||||||||||||
Sbjct: 162 cttcggaccaggcttcattcccc 184




>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
          (papaya)
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 67 ttcggaccaggcttcattcccc 88




>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
          trichocarpa
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 71 ttcggaccaggcttcattcccc 92




>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
          (castor bean)
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 67 ttcggaccaggcttcattcccc 88




>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 71 ttcggaccaggcttcattcccc 92




>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 64 ttcggaccaggcttcattcccc 85




>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
          (sorghum)
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 78 ttcggaccaggcttcattcccc 99




>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 62 ttcggaccaggcttcattcccc 83




>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
           Indica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 65  ttcggaccaggcttcattcccc 86
           ||||||||||||||||||||||
Sbjct: 86  ttcggaccaggcttcattcccc 107




>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
          patens subsp. patens
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 53 ttcggaccaggcttcattcccc 74




>RF00075;mir-166;ABEU01003209.1/178750-178656
          145481:Physcomitrella patens subsp. patens
          Length = 95

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 ttcggaccaggcttcattcccc 86
          ||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90