miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45047_miR156:micropc
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
Query: 61 attatgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 attatgcgtgtgctcacttctcttgctgtca 91
>45582_miR156:micropc
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 62 ttatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 62 ttatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45810_miR156:micropc
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
Query: 61 attatgcgtgtgctcacttctcttgctgtca 91
||||||||||||| |||||||||||||||||
Sbjct: 61 attatgcgtgtgcccacttctcttgctgtca 91
>44842_miR156:micropc
Length = 91
Score = 172 bits (87), Expect = 3e-44
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttgga 60
Query: 61 attatgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||||||||||||||
Sbjct: 61 attatgcgtgtgctcacttctcttgctgtca 91
>45659_miR156:micropc
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 62 ttatgcgtgtgctcacttctcttgctgtc 90
|||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgcccacttctcttgctgtc 89
>45528_miR156:micropc
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 60
Query: 62 ttatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>46798_miR156:micropc
Length = 86
Score = 81.8 bits (41), Expect = 8e-17
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
||||||||||||||||||||||||||| ||||||||||| | | |||||| |||| |
Sbjct: 1 tgacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---a 55
Query: 61 attatgcgtgtgctcacttctcttgctgtca 91
| |||||||||||||||||||||||||||||
Sbjct: 56 aatatgcgtgtgctcacttctcttgctgtca 86
>46175_miR156:micropc
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 83/94 (88%), Gaps = 5/94 (5%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
|||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| |
Sbjct: 1 tgacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgta 58
Query: 61 att---atgcgtgtgctcacttctcttgctgtca 91
||| ||||||||||||||||||||||||||||
Sbjct: 59 attatgatgcgtgtgctcacttctcttgctgtca 92
>45125_miR156:micropc
Length = 84
Score = 77.8 bits (39), Expect = 1e-15
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 55
Query: 62 ttatgcgtgtgctcacttctcttgctgtc 90
||||||||||||||||||||||||||||
Sbjct: 56 atatgcgtgtgctcacttctcttgctgtc 84
>45587_miR156:micropc
Length = 90
Score = 75.8 bits (38), Expect = 5e-15
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
Query: 62 tt---atgcgtgtgctcacttctcttgctgtc 90
|| |||||||||||||||||||||||||||
Sbjct: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
>46709_miR156:micropc
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtca 90
>45385_miR156:micropc
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtca 90
>45182_miR156:micropc
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtca 90
>46803_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>46069_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||||||||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>46842_miR156:micropc
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctctt 84
||||||||||||||||||||||||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>46146_miR156:micropc
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 53 ttgttggaattatgcgtgtgctcacttctctt 84
||||||||||||||||||||||||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>44793_miR156:micropc
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 44 actatacatttgttggaattatgcgtgtgctcacttctctt 84
||||||| ||||| || |||||||||||||||||||||||
Sbjct: 42 actatactcttgtttgagttatgcgtgtgctcacttctctt 82
>46153_miR156:micropc
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||| ||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtca 92
>45524_miR156:micropc
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtca 91
|||||||||||||||||||| ||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtca 92
>46707_miR156:micropc
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctcttgctgtc 90
|||||||||||||||||||| |||||
Sbjct: 65 tgcgtgtgctcacttctctttctgtc 90
>46794_miR156:micropc
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgc 24
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagtgagcacatgc 24
>46066_miR156:micropc
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 tgcgtgtgctcacttctctt 84
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
>45863_miR156:micropc
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgacagaagagagtgagcatatgc 24
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagtgagcacatgc 24
