miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55033_zma-miR171f:pmrd
Length = 155
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttatagcttaattctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttatagcttaattctgc 81
Query: 61 gcattcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatcac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 gcattcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatcac 137
>55024_zma-miR170m:pmrd
Length = 115
Score = 174 bits (88), Expect = 9e-45
Identities = 111/117 (94%), Gaps = 5/117 (4%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaactcgccggccgcgggtggctta---tagcttaattc 57
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttagctta--ttaattc 58
Query: 58 tgcgcattcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 114
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 tgcgcgttcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 115
>55039_zma-miR171m:pmrd
Length = 113
Score = 170 bits (86), Expect = 1e-43
Identities = 109/115 (94%), Gaps = 5/115 (4%)
Strand = Plus / Plus
Query: 3 gatgttggcatggctcaatcaactcgccggccgcgggtggctta---tagcttaattctg 59
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 gatgttggcatggctcaatcaactcgccggccgcgggtggcttagctta--ttaattctg 58
Query: 60 cgcattcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 114
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 cgcgttcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 113
>46979_ath-miR171c:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 87 gtttaattgattgagccgtgccaatatcac 116
||||| ||||||||||||||||||||||||
Sbjct: 80 gtttatttgattgagccgtgccaatatcac 109
>55036_zma-miR171i:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatcac 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaactcgccggccg 35
|||||||||||| || |||||||| ||||||||||
Sbjct: 19 gcgatgttggcacggttcaatcaaatcgccggccg 53
>55029_zma-miR171b:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>54831_vvi-miR171d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatcac 89
>54830_vvi-miR171c:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatcac 92
>54462_sbi-miR171k:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>54452_sbi-miR171a:pmrd
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 121 ttgattgagccgtgccaatatcac 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaa 24
||||||||||||||| ||||||||
Sbjct: 19 gcgatgttggcatggttcaatcaa 42
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 62 ttgattgagccgtgccaatatcac 85
>51685_ptc-miR171b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 70 ttgattgagccgtgccaatatcac 93
>51684_ptc-miR171a:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatcac 94
>48897_osa-miR171c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatcac 91
>48896_osa-miR171b:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatcac 92
>48403_bra-miR171a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 61 ttgattgagccgtgccaatatcac 84
>48386_bol-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcac 90
>48367_bna-miR171e:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatcac 89
>48366_bna-miR171d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatcac 90
>48312_bdi-miR171c:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatcac 116
||||||||||||||||||||||||
Sbjct: 63 ttgattgagccgtgccaatatcac 86
>55037_zma-miR171j:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatcac 112
>54453_sbi-miR171b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatcac 115
>51691_ptc-miR171h:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>51346_ppe-miR171:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatca 115
|||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatca 115
|||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatca 88
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatcac 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaa 24
||||||||||||||| ||||||||
Sbjct: 7 gcgatgttggcatggttcaatcaa 30
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaa 24
||||||||||||||| ||||||||
Sbjct: 9 gcgatgttggcatggttcaatcaa 32
>46877_aqc-miR171b:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatcac 116
|||||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatcac 77
>54836_vvi-miR171i:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatca 115
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>54828_vvi-miR171a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatca 115
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>54579_smo-miR171a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
>54551_sly-miR171a:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 86 ttgattgagccgtgccaatatc 107
>51692_ptc-miR171i:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 99 ttgattgagccgtgccaatatc 120
>48723_mtr-miR171g:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>48406_bra-miR171d:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48405_bra-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48404_bra-miR171b:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>48365_bna-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86
>48364_bna-miR171b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcac 92
>48363_bna-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93
>46978_ath-miR171b:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gattgagccgtgccaatatcac 116
||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcac 97
>46880_aqc-miR171e:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 22 ttgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 83 ttgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 ttgattgagccgtgccaatatc 114
||||||||||||||||||||||
Sbjct: 79 ttgattgagccgtgccaatatc 100
>55032_zma-miR171e:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54552_sly-miR171b:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 attgagccgtgccaatatcac 116
|||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcac 84
>54460_sbi-miR171i:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatc 80
>51689_ptc-miR171f:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121
>51688_ptc-miR171e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgattgagccgtgccaatatc 114
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48567_gma-miR171a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 attgagccgtgccaatatcac 116
|||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcac 90
>46881_aqc-miR171f:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 attgagccgtgccaatatcac 116
|||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcac 84
