miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 117 bits (59), Expect = 6e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 tggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgg 60
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 ataccacagccctat 75
|| ||||||||||||
Sbjct: 71 atcccacagccctat 85
Score = 113 bits (57), Expect = 9e-25
Identities = 77/83 (92%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 112 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 171
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagcttcattaccttgta---ttagatcct 159
Query: 172 tgtttggattgaagggagctcta 194
|||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctcta 182
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 9e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 3 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 62
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 accacagcccta 74
|||||||||||
Sbjct: 73 tccacagcccta 84
Score = 61.9 bits (31), Expect = 3e-09
Identities = 68/78 (87%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 117 taggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttgttt 176
|||||||| || ||||||||||| |||||| ||||||| || | ||| ||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacccta--agctta-atccttgttt 164
Query: 177 ggattgaagggagctcta 194
||||||||||||||||||
Sbjct: 165 ggattgaagggagctcta 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 99.6 bits (50), Expect = 1e-20
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 tggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgg 60
||||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 ataccacagccctatccc 78
|| |||||||||||||||
Sbjct: 71 atcccacagccctatccc 88
Score = 89.7 bits (45), Expect = 1e-17
Identities = 74/83 (89%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 112 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 171
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 159
Query: 172 tgtttggattgaagggagctcta 194
|||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctcta 182
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 87.7 bits (44), Expect = 5e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgg 60
||||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 61 ataccacagccctatc 76
|| |||||| ||||||
Sbjct: 71 at-ccacagtcctatc 85
Score = 69.9 bits (35), Expect = 1e-11
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 114 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 173
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 174 tttggattgaagggagctcta 194
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 83.8 bits (42), Expect = 8e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 3 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 62
||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 accacagccctatc 76
|||||||||||||
Sbjct: 61 cccacagccctatc 74
Score = 67.9 bits (34), Expect = 5e-11
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 126 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 185
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 157
Query: 186 ggagctct 193
||||||||
Sbjct: 158 ggagctct 165
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 79.8 bits (40), Expect = 1e-14
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 1 tggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgg 60
||||||||||| |||||||| ||| ||||| |||| |||||||||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 ataccacagccctatc 76
|| || ||||||||||
Sbjct: 71 attcctcagccctatc 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 161 tgttagatccttgtttggattgaagggagctcta 194
|||| |||| || |||||||||||||||||||||
Sbjct: 155 tgtttgatcattttttggattgaagggagctcta 188
