miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 141 bits (71), Expect = 2e-33
Identities = 106/117 (90%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct: 121 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 62
Query: 61 caaaatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
|||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct: 61 taaaatacatctagatacatccattcccccgacaagtatttccggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcg 28
||||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcg 32
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 141 bits (71), Expect = 2e-33
Identities = 106/117 (90%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 64
Query: 61 caaaatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
|||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct: 65 taaaatacatctagatacatccattcccccgacaagtatttccggacggagggagta 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcg 28
||||||||||||||| ||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcg 94
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 125 bits (63), Expect = 1e-28
Identities = 104/117 (88%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcctgaaatacttgtcggagaaatgcataaaaatggatgtatctagaac 64
Query: 61 caaaatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
||||||| ||||| |||||| ||||||| |||| ||||||||||||||||||||
Sbjct: 65 taaaatacgtctaggtacatccattcctctgacaagtatttccggacagagggagta 121
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 117 bits (59), Expect = 3e-26
Identities = 103/117 (88%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| || |||||||| | ||||||||||||||| || ||||||||||
Sbjct: 121 tactccctccgtccggaattacttgtcacacaaatggataaaaatggatatatctagaac 62
Query: 61 caaaatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
|||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 61 taaaatacatctagatacatccattcctatgacaaatatttccggacagagggagta 5
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 117 bits (59), Expect = 3e-26
Identities = 86/95 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| || ||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 121 tactccctccgtccggaactacttgttgcagaaatggataaaaatggatgtatctagaac 62
Query: 61 caaaatacatctagatacatctattcctccgacaa 95
||||||| |||||||||||| ||| |||||||||
Sbjct: 61 taaaatacgtctagatacatccatttctccgacaa 27
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggat 39
|||||||||||||||||| || |||||| ||||||||||
Sbjct: 5 tactccctccgtccgaaattatttgtcggagaaatggat 43
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 111 bits (56), Expect = 2e-24
Identities = 87/96 (90%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggatataaatggatgtatctagaac 64
Query: 61 caaaatacatc-tagatacatctattcctccgacaa 95
|||||||||| | |||||||| ||||||| |||||
Sbjct: 65 taaaatacatctttgatacatccattcctcggacaa 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||||||||||||||||||||||||
Sbjct: 122 tactccctccgtccgaaaatacttgtc 96
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 109 bits (55), Expect = 8e-24
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 tactccctctgtccgaaaatacttgtcatcaaaatggataaaaatgaatgtatctagaac 62
Query: 61 caaaatacatctagataca 79
||||||||||||||||||
Sbjct: 61 taaaatacatctagataca 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtccgaaaatacttgtc 31
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 103 bits (52), Expect = 5e-22
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 2 actccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaacc 61
||||||||||| || |||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatgcctaaaaataaatgtatctagaact 60
Query: 62 aaaatacatctagatacatctattcctccgac 93
||||||||||||||||||| |||| ||||||
Sbjct: 61 aaaatacatctagatacattaattcttccgac 92
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 101 bits (51), Expect = 2e-21
Identities = 101/117 (86%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||| ||||| || ||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 5 tactccctctgtccggaattacttgtcgcataaatggataaaaatggatgtatctagaat 64
Query: 61 caaaatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
|||||||||||||||| || ||| |||||||| |||||||||| |||||||||
Sbjct: 65 taaaatacatctagatagattcatttctccgacaagtatttccggacggagggagta 121
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatg 36
||||||||||||||| |||||||||||| |||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatg 86
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 95.6 bits (48), Expect = 1e-19
Identities = 99/114 (86%), Gaps = 4/114 (3%)
Strand = Plus / Plus
Query: 5 ccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac-caa 63
|||||| |||| || ||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct: 8 ccctccatccggaattacttgtcgtagaaatgggtaaaaatgaatgtatctagaactaaa 67
Query: 64 aatacatctagatacatctattcctccgaca---atttccggacagagggagta 114
||||| | |||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 68 aatacgtttagatacatctatttctccgacaggtatttccggatggagggagta 121
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 93.7 bits (47), Expect = 5e-19
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 2 actccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaacc 61
|||||||| |||| || ||||||||| | |||| |||||||||| |||||||||||||
Sbjct: 120 actccctctgtccagaattacttgtcgcataaattgataaaaatggatgtatctagaact 61
Query: 62 aaaatacatctagatacatctattcct 88
|||||||||||||||||||| ||||||
Sbjct: 60 aaaatacatctagatacatccattcct 34
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 5 tactcgcttcgtccgaaaatacttgtcatcaaaatggataaaaaagaatgtatctagaat 64
Query: 61 caaaatacatctagatacatct 82
|||||||||||||||||||||
Sbjct: 65 taaaatacatctagatacatct 86
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 89.7 bits (45), Expect = 7e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||||||||||||||| ||||||| ||||| | |||||| ||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatggacaaaaagggatgtatttagaac 64
Query: 61 caaaatacatctagatacatc 81
||||||||||||||||||||
Sbjct: 65 taaaatacatctagatacatc 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgtc 105
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 89.7 bits (45), Expect = 7e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||| |||||||||||||| |||||||||| || ||||||||||||||
Sbjct: 5 tactccctccgttcgaaaatacttgtcatcaaaatggataataagaaatgtatctagaac 64
Query: 61 caaaatacatctagatacatc 81
||||||||||||||||||||
Sbjct: 65 taaaatacatctagatacatc 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 132 tactccctccgtccggaaatacttgtc 106
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||| |||||||| || ||||||||| | |||| |||||||||||||||||||||||
Sbjct: 5 tactccgtccgtccggaattacttgtcgcacaaatatataaaaatgaatgtatctagaac 64
Query: 61 caaaatacatctagatacat 80
|||||| ||||||||||||
Sbjct: 65 taaaatatatctagatacat 84
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 83/95 (87%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||| ||| ||||||||||| | | ||||||||||||||| ||||||||||||
Sbjct: 120 tactccctccatccaaaaatacttgttgga-aaatggataaaaatggatgtatctagaag 62
Query: 61 caaaatacatctagatacatctattcctccgacaa 95
||||||| |||||||||||| ||| ||| |||||
Sbjct: 61 taaaatacgtctagatacatccatttctctgacaa 27
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 83.8 bits (42), Expect = 5e-16
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 6 cctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaaccaaaa 65
|||||||||| || ||||| ||| | ||||||||| |||||||||||| |||||| ||||
Sbjct: 10 cctccgtccggaattacttatcgcaaaaatggatagaaatgaatgtatttagaactaaaa 69
Query: 66 tacatctagatacatctattcctccgacaa 95
| |||||||||||||| |||| | ||||||
Sbjct: 70 tgcatctagatacatccattctttcgacaa 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggat 39
||||||||||||| |||||||||||||||| |||||||
Sbjct: 121 tactccctccgtcagaaaatacttgtcgaaagaatggat 83
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| || ||||||||| ||||||| | ||||| |||||||||||||
Sbjct: 5 tactccctccgtccggaagtacttgtcgtcaaaatggaaagaaatggatgtatctagaac 64
Query: 61 caaaatacatctagatacatc 81
||||||| ||||||||||||
Sbjct: 65 taaaatacgtctagatacatc 85
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| || |||||||| | ||||| ||||||||| ||||||||||||
Sbjct: 5 tactccctccgtccggaattacttgtcacataaatgtataaaaatggatgtatctagaat 64
Query: 61 caaaatacatctagatacat 80
| |||||||||||||||||
Sbjct: 65 tataatacatctagatacat 84
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 77.8 bits (39), Expect = 3e-14
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||| ||||| || ||||||| | ||||||||| ||||||||||||| ||||||
Sbjct: 120 tactccctctgtccggaattacttgt-gccgaaatggattaaaatgaatgtatttagaac 62
Query: 61 caaaatacatctagatacatctattcctccgacaa 95
||||||| |||||||||||| ||| ||| |||||
Sbjct: 61 taaaatacgtctagatacatcaatttctcagacaa 27
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtc 31
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct: 131 tactccctccgtccgaaaatacttgtcatcaaaatggataaaaataaatgtatttagaac 72
Query: 61 caaaata 67
||||||
Sbjct: 71 taaaata 65
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||||| ||||||||||||||||||
Sbjct: 5 tactcccttcgtccgaaaatacttgtc 31
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||| | || || ||||||||| | ||||| ||| ||||| ||||||||| |||
Sbjct: 121 tactccctccatgcggaattacttgtcgcaaaaatgaatagaaatggatgtatctataac 62
Query: 61 caaaatacatctagatacatctattc 86
|||||||||||||||||||| ||||
Sbjct: 61 taaaatacatctagatacatccattc 36
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 4 tccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaaccaa 63
||||||||| ||||| |||| ||| | ||||||||||||||| ||||||||| || ||
Sbjct: 8 tccctccgttcgaaattactcgtcacaaaaatggataaaaatggatgtatctacaattaa 67
Query: 64 aatacatctagatacat 80
|||||||||||||||||
Sbjct: 68 aatacatctagatacat 84
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatctatt 85
||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 80 aaatgaatgtatctagaactaaaatacaactagatacatctatt 37
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 69.9 bits (35), Expect = 7e-12
Identities = 81/95 (85%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| |||||||||| | | |||||||||||||||||||| | || |||
Sbjct: 120 tactccctccgtccggaaatacttgtggga-aaatggataaaaatgaatgtgtataaaac 62
Query: 61 caaaatacatctagatacatctattcctccgacaa 95
||| || ||||||| |||| ||| |||||||||
Sbjct: 61 taaagcacgtctagatgcatccatttctccgacaa 27
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggat 39
|||| |||||||| | |||||||||||| ||||||||||
Sbjct: 5 tacttcctccgtctggaaatacttgtcggagaaatggat 43
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 18 aatacttgtcgaagaaatggataaaaatgaatgtatctagaaccaaaatacatctagata 77
||||||||||| ||||| ||||||||||| |||||| |||||| ||||||| |||| |||
Sbjct: 22 aatacttgtcggagaaacggataaaaatggatgtatgtagaactaaaatacgtctaaata 81
Query: 78 cat 80
|||
Sbjct: 82 cat 84
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||||| |||||| ||||| ||||||||||||| | || |||||| |||
Sbjct: 131 tactccctccgtccaaaaataattgtcatcaaaatggataaaaaaggatatatctaaaac 72
Query: 61 caaaatacatctagatacatct 82
|| ||||||||||||||||||
Sbjct: 71 taatatacatctagatacatct 50
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtccggaaatatttgtcatcagaatggataaaaagtggtgtatctagaac 64
Query: 61 caaaatacatctagatacatc 81
||||||||||||||||||||
Sbjct: 65 taaaatacatctagatacatc 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgtc 105
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||||||||||||||| ||||| | ||||| || ||||||||||
Sbjct: 130 tactccctccgtccgaaaatacttgtcatcaaaatgaacaaaaagagatatatctagaac 71
Query: 61 caaaatacatctagatacatc 81
|||||||||||| |||||||
Sbjct: 70 taaaatacatctaaatacatc 50
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||||||||||||||| | ||| | ||||| |||||| ||||||
Sbjct: 142 tactccctccgtccgaaaatacttgtcatcaatatgaacaaaaagagatgtatgtagaac 83
Query: 61 caaaatacatctagatacatc 81
||||||||||||||||||||
Sbjct: 82 taaaatacatctagatacatc 62
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatc 81
||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 79 aaatggatgtatctagaactaaaatacatctagatacatc 40
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatc 81
||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 36 aaatggatgtatctagaactaaaatacatctagatacatc 75
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 10 cgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaaccaaaataca 69
|||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||
Sbjct: 14 cgtccgaaaatacttgtcatcaaaatggataaaaaatgatgtacctagaactaaaataca 73
Query: 70 tctagatacat 80
|||| ||||||
Sbjct: 74 tctatatacat 84
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 10 cgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaaccaaaataca 69
|||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| |
Sbjct: 14 cgtccgaaaatacttgtcatcaaaatggataaaaagagatgtacctagaactaaaatata 73
Query: 70 tctagatacat 80
|||||||||||
Sbjct: 74 tctagatacat 84
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||||||||||||||||||||||||
Sbjct: 131 tactccctccgtccgaaaatacttgtc 105
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| ||||||||||| ||||||| |||||| || ||||||||| |||
Sbjct: 5 tactccctccgtccgcaaatacttgtcctagaaatgaataaaattg-atgtatctataac 63
Query: 61 caaaata 67
||||||
Sbjct: 64 taaaata 70
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| ||||||||||| | ||||| || |||||| ||||||||| ||
Sbjct: 120 tactccctccgtccggaaatacttgtcataaaaatgtat-aaaatggatgtatctataag 62
Query: 61 caaaatacatctagatacatcta 83
|||||| ||||||||||||||
Sbjct: 61 taaaataagtctagatacatcta 39
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 38 ataaaaatgaatgtatctagaaccaaaatacatctagatacat 80
||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 32 ataaaaatggatgtatctataactaaaatacatctagatacat 74
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 60.0 bits (30), Expect = 7e-09
Identities = 65/76 (85%), Gaps = 3/76 (3%)
Strand = Plus / Minus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatctattcctccgaca---attt 98
||||| ||||||||||||| ||||||||||||||||||| ||| | ||||| ||||
Sbjct: 80 aaatggatgtatctagaactgaaatacatctagatacatccatttccgcgacaagtattt 21
Query: 99 ccggacagagggagta 114
| ||||||||||||||
Sbjct: 20 cgggacagagggagta 5
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 41 aaaatgaatgtatctagaaccaaaatacatctagatacatc 81
|||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 35 aaaatggatgtatctagaactaaaatacatcttgatacatc 75
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 48 atgtatctagaaccaaaatacatctagatacat 80
||||||||||||| |||||||||||||||||||
Sbjct: 42 atgtatctagaactaaaatacatctagatacat 74
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||||||||||||||| || || |||||| |||||||||||||
Sbjct: 131 tactccctccgtccgaaaatacttgtcatcaaagtgactaaaaagagatgtatctagaac 72
Query: 61 caaaatacatctagatacatc 81
|||||| ||||||||||||
Sbjct: 71 taaaatatgtctagatacatc 51
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctaga 58
||||||||||||||| ||||||||||| |||||||||||| | |||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcatcaaaatggataaaaggggatgtatctaga 62
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatac-ttgtcgaagaaatggataaaaatgaatgtatctagaa 59
|||||||||||||| ||||||| ||||| ||||||||||| || |||| ||||||| ||
Sbjct: 121 tactccctccgtcccaaaatactttgtcctagaaatggatataactgaa-gtatctataa 63
Query: 60 ccaaaatacatctagatacat 80
|||||| ||||||||||||
Sbjct: 62 ttaaaataaatctagatacat 42
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| ||||||||||| ||||||| || | |||| ||||||||| |||
Sbjct: 5 tactccctccgtccggaaatacttgtcccagaaatgaat-ataatggatgtatctataac 63
Query: 61 caaaatacatctagata 77
|||||| ||||||||
Sbjct: 64 taaaataagtctagata 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgt 26
||||||||||||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatc 81
||||| ||||||||| ||| ||||||||||||||||||||
Sbjct: 80 aaatggatgtatctataactaaaatacatctagatacatc 41
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggata 40
||||||||||||||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgtccgaaaatacttgtcattgaaatggata 72
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 41 aaaatgaatgtatctagaaccaaaatacatctagata 77
|||||| |||| |||||||| ||||||||||||||||
Sbjct: 35 aaaatggatgtgtctagaactaaaatacatctagata 71
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| ||||||||||| | |||||||| | | || ||||||||| |||
Sbjct: 5 tactccctccgtccggaaatacttgtcctaaaaatggat-atattggatgtatctataac 63
Query: 61 caaaatacatctagatacat 80
|||||| |||||||||||
Sbjct: 64 taaaataagtctagatacat 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||||||||| |||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtc 94
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 41 aaaatgaatgtatctagaaccaaaatacatctagatacatctattcctccgacaa 95
|||||||||||||||||||| |||| | |||||||||||| ||| || ||||||
Sbjct: 89 aaaatgaatgtatctagaactaaaactcgtctagatacatccatttctgcgacaa 35
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||| ||||||||||||||||||||||
Sbjct: 96 tacttcctccgtccgaaaatacttgtc 70
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacat 80
|||||||||||||||||| |||||| ||||||||||||
Sbjct: 36 aaatgaatgtatctagaattaaaataaatctagatacat 74
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||| | |||||||||||| | ||||| ||| ||||| ||| ||||| |||
Sbjct: 121 tactccctccgttcagaaatacttgtcgcaaaaatgaatataaatggatgcatctaaaac 62
Query: 61 caaaatacatctagatacatctattcctccgacaa 95
|||||| |||| ||||||| |||| | ||||||
Sbjct: 61 taaaatatgtctaaatacatccattctttcgacaa 27
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggat 39
|||||| |||||||| |||||||||||||| |||||||
Sbjct: 5 tactccttccgtccggaaatacttgtcgaaagaatggat 43
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||||||||| || |||||||| ||||||| | |||||||||||| ||||||
Sbjct: 121 tactccctccgtccggaattacttgtcaccaaaatggaaataaatgaatgtatttagaac 62
Query: 61 caaaata 67
||||||
Sbjct: 61 taaaata 55
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 40 aaaaatgaatgtatctagaaccaaaatacatctagatacatc 81
||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 34 aaaaatggatgtatctagaactaaaatatgtctagatacatc 75
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 48 atgtatctagaaccaaaatacatctagatacatc 81
||||||||||||| ||||||| ||||||||||||
Sbjct: 42 atgtatctagaactaaaatacgtctagatacatc 75
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 41 aaaatgaatgtatctagaaccaaaatacatctagatacatc 81
|||||| || |||||||||| ||||||| ||||||||||||
Sbjct: 35 aaaatggatctatctagaactaaaatacgtctagatacatc 75
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||| |||||||||||||||||||| |||||| || |||||| ||||| || |||
Sbjct: 120 tactccatccgtccgaaaatacttgtcctagaaataaat-aaaatgggtgtatttataac 62
Query: 61 caaaatacatctagatacatctatt 85
|||||| |||| |||||||||||
Sbjct: 61 taaaataattctacatacatctatt 37
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 gtatctagaaccaaaatacatctagatacatctatt 85
|||| |||||| |||||||||||||||| |||||||
Sbjct: 44 gtatttagaactaaaatacatctagatatatctatt 79
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 42 aaatgaatgtatctagaaccaaaatacatctagatacatc 81
||||| || |||||| ||| ||||||||||||||||||||
Sbjct: 80 aaatggatatatctaaaactaaaatacatctagatacatc 41
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 2e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
||||||||| |||||||||| ||||| |||||||||| | |||| ||||||| | |||
Sbjct: 5 tactccctctatccgaaaatatttgtcctagaaatggat-ataatggatgtatccataac 63
Query: 61 caaaatacatctagatacat 80
|||||| || |||||||||
Sbjct: 64 taaaataaatttagatacat 83
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 2e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtcgaagaaatggataaaaatgaatgtatctagaac 60
|||||||||||||| ||||||||||| ||||||| || | ||| ||||||||| |||
Sbjct: 5 tactccctccgtccagaaatacttgtcctagaaatgaat-ataatagatgtatctataac 63
Query: 61 caaaatacatctagatacat 80
|||||| |||||||||||
Sbjct: 64 taaaataagtctagatacat 83
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||| |||||||||||||||||||||
Sbjct: 5 tactctctccgtccgaaaatacttgtc 31
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcagaaaatacttgtc 31
>RF00906;MIR1122;DQ257569.1/307-193 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 48 atgtatctagaaccaaaatacatctagatac 78
|||||||||| ||| ||||||||||||||||
Sbjct: 42 atgtatctagcaccgaaatacatctagatac 72
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tactccctccgtccgaaaatacttgtc 27
|||||| ||||||||||||||||||||
Sbjct: 5 tactccatccgtccgaaaatacttgtc 31
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tactccctccgtccgaaaatacttgt 26
||||||||||||||| ||||||||||
Sbjct: 137 tactccctccgtccggaaatacttgt 112
