miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccgccg 64
Query: 61 tgtgctcgctcctctttctg 80
|||||||||||||||||||
Sbjct: 65 cgtgctcgctcctctttctg 84
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggcgcg 25
|||||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggcgcg 29
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggcg 23
|||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggcg 27
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggc 22
||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggc 26
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggc 22
||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggc 26
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggcgcggcggc 30
|||||||||| |||||| ||||||||||||
Sbjct: 5 cagaagagagcgagcacccggcgcggcggc 34
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggc 22
||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggc 26
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagaagagagtgagcacacggc 22
||||||||||||||||||||||
Sbjct: 5 cagaagagagtgagcacacggc 26
