miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
          Japonica Group
          Length = 130

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  agccaaggatgacttgccggccgg 24
          ||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggccgg 36





>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
          (papaya)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  agccaaggatgacttgccggccg 23
          |||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggccg 38





>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
          (sorghum)
          Length = 142

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  agccaaggatgacttgccggccg 23
          |||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggccg 35





>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  agccaaggatgacttgccggcc 22
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcc 34





>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
          Japonica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  agccaaggatgacttgccggcc 22
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcc 34