miRNEST 2.0, an integrative microRNA resource :: BLAST
>40468_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 8e-10
Identities = 65/77 (84%), Gaps = 5/77 (6%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttg-----aatcttgatcttcatttgcgc 55
||||||||||||||||||||||||| | |||| | ||||||||||| ||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatcttctcttcactcttgatcttctcttgcgc 70
Query: 56 tatccatcctgagtttc 72
|||||||||||||||||
Sbjct: 71 tatccatcctgagtttc 87
>40467_gma-MIR390a:mirbase
Length = 105
Score = 58.0 bits (29), Expect = 8e-10
Identities = 65/77 (84%), Gaps = 5/77 (6%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttg-----aatcttgatcttcatttgcgc 55
||||||||||||||||||||||||| | |||| | ||||||||||| ||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatcttctcttcactcttgatcttctcttgcgc 70
Query: 56 tatccatcctgagtttc 72
|||||||||||||||||
Sbjct: 71 tatccatcctgagtttc 87
>40705_mtr-MIR390:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 39 ttgatcttcatttgcgctatccatcctgagtttc 72
||||||||| |||||||||||||||||||||||
Sbjct: 63 ttgatcttctcttgcgctatccatcctgagtttc 96
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccat 28
>40073_ath-MIR390b:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggc 26
||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtt 105
>41237_csi-MIR390:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccatgg 45
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 98 gcgctatccatcctgagtttc 118
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 40 tgatcttcatttgcgctatccatcctgagtttc 72
||||| ||||| |||||||||||||||||||||
Sbjct: 76 tgatcctcattagcgctatccatcctgagtttc 108
Score = 48.1 bits (24), Expect = 8e-07
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggcgggtcttgaatctt 40
||||||||||||||||||||||| | | |||||||||||
Sbjct: 21 aagctcaggagggatagcgccattgatgatcttgaatctt 60
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatgg 35
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttc 107
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatgg 42
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttc 114
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttc 111
>40372_rco-MIR390b:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatgg 30
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 96 gcgctatccatcctgagtttc 116
>41640_vvi-MIR390:mirbase
Length = 140
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>40294_bna-MIR390c:mirbase
Length = 128
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 85 gcgctatccatcctgagtt 103
>40292_bna-MIR390a:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 95 gcgctatccatcctgagtt 113
>40072_ath-MIR390a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttc 89
>39863_aly-MIR390b:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtt 70
|||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtt 109
>39862_aly-MIR390a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgccatg 52
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 80 gcgctatccatcctgagtttc 100
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccat 43
>40293_bna-MIR390b:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagttt 71
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttc 99
>40371_rco-MIR390a:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gcgctatccatcctgagtttc 72
|||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttc 102
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
