miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48687_ltu-miR319:pmrd
Length = 167
Score = 327 bits (165), Expect = 2e-90
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 1 ggagctctcttcagtccagtccaagatagtattaagccaatctccgctgctgactcgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggagctctcttcagtccagtccaagatagtattaagccaatctccgctgctgactcgttg 61
Query: 61 gctcatgaactcatccaacggctaggattccgatgtgtttttgatccaacgatgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gctcatgaactcatccaacggctaggattccgatgtgtttttgatccaacgatgcgggag 121
Query: 121 ccgtgtttggttctgtctgtctcgtcttggactgaagggagctcc 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccgtgtttggttctgtctgtctcgtcttggactgaagggagctcc 166
>54843_vvi-miR319b:pmrd
Length = 194
Score = 71.9 bits (36), Expect = 1e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 98 tttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttggactgaag 157
|||||||||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||
Sbjct: 114 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 173
Query: 158 ggagctcc 165
||||||||
Sbjct: 174 ggagctcc 181
>51390_ppt-miR319e:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 153 tcttggactgaagggagctcc 173
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 139 tcttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctcc 165
|||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctcc 167
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctcc 180
>54844_vvi-miR319c:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctcc 169
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctcc 186
>51707_ptc-miR319a:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 cttggactgaagggagctcc 165
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
