miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 172 bits (87), Expect = 5e-43
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 2 agctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgatcat 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 18 agctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataat 77
Query: 62 tttcttgcaagttgtgcagttgttgtctcaagctt 96
|||||||||||||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagctt 112
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 127 bits (64), Expect = 3e-29
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgatca 60
||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct: 17 aagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatga 76
Query: 61 ttttcttgcaagttgtgcagttgttgtctcaagctt 96
|||||||||||| |||||||||||||||||||||||
Sbjct: 77 ttttcttgcaagctgtgcagttgttgtctcaagctt 112
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 101 bits (51), Expect = 2e-21
Identities = 87/98 (88%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa--ttggtttttgaaccataccgat 58
||||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 17 aagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgat 76
Query: 59 cattttcttgcaagttgtgcagttgttgtctcaagctt 96
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 gattttcttgcaagttgtgcagttgttgtctcaagctt 114
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 62 tttcttgcaagttgtgcagttgttgtctcaagctt 96
||||||||||||||||||||||||| |||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagctt 223
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 62 tttcttgcaagttgtgcagttgttgtctcaagctt 96
||||||||||||||||||||||||| |||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagctt 151
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 62 tttcttgcaagttgtgcagttgttgtctcaagctt 96
||||||||||||||||||||||||| |||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagctt 149
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 50 cataccgatcattttcttgcaagttgtgcagttgttgtctcaagctt 96
||||||||| || |||||||||||| |||||||| || |||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagctt 113
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaa 34
||||| ||||||||||||||||| ||||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaaga 33
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttcttgcaagttgtgcagttgttgtctcaagctt 96
|||||||||||| ||||||||| || |||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagctt 157
