miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48902_osa-miR171h:pmrd
          Length = 101

 Score =  119 bits (60), Expect = 2e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtttggtattgtttcggctcatgtcgttcacacagatgtgagccgaaccaatatcactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggtttggtattgtttcggctcatgtcgttcacacagatgtgagccgaaccaatatcactc 75

>55038_zma-miR171k:pmrd
          Length = 104

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 36 gatgtgagccgaaccaatatcactc 60
          |||||||||||||||||||||||||
Sbjct: 62 gatgtgagccgaaccaatatcactc 86



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  tggtattgtttcggctcatgtc 26
          ||||||||||||||||||||||
Sbjct: 24 tggtattgtttcggctcatgtc 45

>55035_zma-miR171h:pmrd
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 36  gatgtgagccgaaccaatatcactc 60
           |||||||||||||||||||||||||
Sbjct: 82  gatgtgagccgaaccaatatcactc 106



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  tggtattgtttcggctcatgtc 26
          ||||||||||||||||||||||
Sbjct: 24 tggtattgtttcggctcatgtc 45

>54456_sbi-miR171e:pmrd
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 36  gatgtgagccgaaccaatatcactc 60
           |||||||||||||||||||||||||
Sbjct: 82  gatgtgagccgaaccaatatcactc 106



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  tggtattgtttcggctcatgtc 26
          ||||||||||||||||||||||
Sbjct: 24 tggtattgtttcggctcatgtc 45

>54457_sbi-miR171f:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 40  tgagccgaaccaatatcactc 60
           |||||||||||||||||||||
Sbjct: 81  tgagccgaaccaatatcactc 101

>54894_vvi-miR479:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 gagccgaaccaatatcactc 60
          ||||||||||||||||||||
Sbjct: 64 gagccgaaccaatatcactc 83

>54834_vvi-miR171g:pmrd
          Length = 76

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 40 tgagccgaaccaatatcac 58
          |||||||||||||||||||
Sbjct: 47 tgagccgaaccaatatcac 65