miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
          Japonica Group
          Length = 89

 Score =  119 bits (60), Expect = 4e-27
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtttggtattgtttcggctcatgtcgttcacacagatgtgagccgaaccaatatcactc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ggtttggtattgtttcggctcatgtcgttcacacagatgtgagccgaaccaatatcactc 75





>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
           (sorghum)
          Length = 116

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 36  gatgtgagccgaaccaatatcactc 60
           |||||||||||||||||||||||||
Sbjct: 78  gatgtgagccgaaccaatatcactc 102



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 5  tggtattgtttcggctcatgtc 26
          ||||||||||||||||||||||
Sbjct: 20 tggtattgtttcggctcatgtc 41





>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
          (sorghum)
          Length = 111

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 40 tgagccgaaccaatatcactc 60
          |||||||||||||||||||||
Sbjct: 77 tgagccgaaccaatatcactc 97