miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 210 bits (106), Expect = 3e-54
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tagccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtg 66
Query: 61 gcctggctggttcagatgagccgagataggcagtctccttggctag 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcctggctggttcagatgagccgagataggcagtctccttggctag 20
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 210 bits (106), Expect = 3e-54
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctattgtgctcttctgaatgatgcagtgccatgatcagtgtg 73
Query: 61 gcctggctggttcagatgagccgagataggcagtctccttggctag 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gcctggctggttcagatgagccgagataggcagtctccttggctag 119
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatt 23
|||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctatt 99
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatt 23
|||||||||||||||||||||||
Sbjct: 132 tagccaaggatgacttgcctatt 110
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatt 23
|||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctatt 38
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatt 23
|||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctatt 35
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 107 tagccaaggatgacttgcctat 86
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 107 tagccaaggatgacttgcctat 86
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctat 88
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctat 30
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctat 30
