miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 60.0 bits (30), Expect = 3e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| ||||||||||||||||||||||
Sbjct: 39 tggatgtatctagatgtattttagttatagatac 72
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 60.0 bits (30), Expect = 3e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| ||||||||||||||||||||||
Sbjct: 39 tggatgtatctagatgtattttagttatagatac 72
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 atgtatctggatgtattttagttatagatac 42
|||||||| ||||||||||||||||||||||
Sbjct: 74 atgtatctagatgtattttagttatagatac 44
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| |||||||||||||| |||||||
Sbjct: 38 tggatgtatctagatgtattttagttctagatac 71
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| |||||||||||||| |||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| |||||||||||||| |||||||
Sbjct: 87 tggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| |||||||||||||| |||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 52.0 bits (26), Expect = 6e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| |||||||||||||| |||||||
Sbjct: 77 tggatgtatctagatgtattttagttctagatac 44
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 10 ggatgtatctggatgtattttagttatagatac 42
|||||||||| |||||||||||||| |||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagata 41
||||||||||| |||||||||||||| ||||||
Sbjct: 39 tggatgtatctagatgtattttagttttagata 71
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagata 41
||||||||||| |||||||||||||| ||||||
Sbjct: 39 tggatgtatctagatgtattttagttctagata 71
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 10 ggatgtatctggatgtattttagttatagatac 42
|||||||||| |||||||||||||| |||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatac 54
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 12 atgtatctggatgtattttagttatagatacctccgtatc 51
|||||||| |||||||||||||| ||||||| ||| ||||
Sbjct: 74 atgtatctagatgtattttagttctagatacatccatatc 35
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 4e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 atgtatctggatgtattttagttatagatac 42
|||||||| |||||||||||||| |||||||
Sbjct: 79 atgtatctagatgtattttagttctagatac 49
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
|||||||||| |||||||||||||| |||||||
Sbjct: 77 tggatgtatcaagatgtattttagttctagatac 44
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| || ||||||||||| |||||||
Sbjct: 77 tggatgtatctagacgtattttagttctagatac 44
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 tgtatctggatgtattttagttatagatac 42
||||||| |||||||||||||| |||||||
Sbjct: 43 tgtatctagatgtattttagttctagatac 72
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| ||||||||| |||| |||||||
Sbjct: 39 tggatgtatctagatgtatttcagttctagatac 72
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| || ||||||||||| |||||||
Sbjct: 87 tggatgtatctagacgtattttagttctagatac 54
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tggatgtatctggatgtattttagttatagatac 42
||||||||||| || ||||||||||| |||||||
Sbjct: 39 tggatgtatctagacgtattttagttctagatac 72
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ggatgtatctggatgtattttagtt 34
|||||||||| ||||||||||||||
Sbjct: 61 ggatgtatctagatgtattttagtt 85
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 10 ggatgtatctggatgtattttagtt 34
|||||||||| ||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagtt 62
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 42.1 bits (21), Expect = 6e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 9 tggatgtatctggatgtattttagttatagata 41
||||||||||| || ||||||||||| ||||||
Sbjct: 77 tggatgtatctagacgtattttagttctagata 45
