miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 119 bits (60), Expect = 1e-26
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 139 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 198
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 199 gaagggagctcc 210
Score = 97.6 bits (49), Expect = 5e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 61 tccaaatgctgag 73
||||||| |||||
Sbjct: 73 tccaaatactgag 85
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 111 bits (56), Expect = 4e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 106 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 165
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 166 gaagggagctcc 177
Score = 97.6 bits (49), Expect = 5e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 61 tccaaatgctgag 73
||||||| |||||
Sbjct: 72 tccaaatactgag 84
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 105 bits (53), Expect = 2e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 119 tcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggac 178
||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 93 tcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggac 152
Query: 179 tgaagggagctcc 191
|||||||||||||
Sbjct: 153 tgaagggagctcc 165
Score = 79.8 bits (40), Expect = 1e-14
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||| || || |||||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcattca 72
Query: 61 tccaaatgctga 72
||||||||||||
Sbjct: 73 tccaaatgctga 84
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 103 bits (52), Expect = 9e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 99 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 158
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 159 gaagggagctcc 170
Score = 87.7 bits (44), Expect = 5e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgact-cattc 59
||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 60 atccaaat 67
||||||||
Sbjct: 73 atccaaat 80
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 127 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 186
||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct: 117 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaaggga 176
Query: 187 gctcc 191
|||||
Sbjct: 177 gctcc 181
Score = 60.0 bits (30), Expect = 1e-08
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactcattc 59
|||||||||| |||||| |||||||| || || |||| ||||||||| | |||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 60 atccaaatgctgag 73
||||||||| ||||
Sbjct: 73 atccaaatgttgag 86
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 93.7 bits (47), Expect = 8e-19
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 118 ctcagtaactgagtgaatgatgcgggag-acaagttggatcttaagcttcctgtacttgg 176
||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 177 actgaagggagctcc 191
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
|||||||||| |||||| ||||||| | |||| ||||||| ||| ||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 61 tccaaatgctgag 73
|||||||| ||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 63.9 bits (32), Expect = 8e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 164 gaagggagctcc 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaatgctgag 73
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaatgctgag 73
|||||||||||||| |||||||||||||| |||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgag 85
