miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45075_miR819:micropc
Length = 116
Score = 224 bits (113), Expect = 1e-59
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 ttataagactttctagcattatccatattcatatatatgttaatgaatctaaacatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttataagactttctagcattatccatattcatatatatgttaatgaatctaaacatatat 60
Query: 61 gtgtctatattcattaacatctatataaatatggacnatactagaaagtcttataa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtctatattcattaacatctatataaatatggacnatactagaaagtcttataa 116
Score = 107 bits (54), Expect = 2e-24
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 1 ttataagactttctagcattatccatattcatatatatgttaatgaatctaaacatatat 60
|||||||||||||||| || |||||||| ||||| |||||||||||| || ||| ||||
Sbjct: 116 ttataagactttctagtatngtccatatttatatagatgttaatgaatatagacacatat 57
Query: 61 gtgtctatattcattaacatctatataaatatggacnatactagaaagtcttataa 116
||| || |||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct: 56 atgtttagattcattaacatatatatgaatatggataatgctagaaagtcttataa 1
>44978_miR1130:micropc
Length = 144
Score = 99.6 bits (50), Expect = 4e-22
Identities = 97/112 (86%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 4 taagactttctagcattatccatattcatatatatgttaatgaatctaaacatatatgtg 63
|||||||||||||||||| | |||||||||| |||| ||| ||||||||||||||||||
Sbjct: 128 taagactttctagcattacctgtattcatatagatgtcaataaatctaaacatatatgtg 69
Query: 64 t--ctatattcattaacatctatataaatatggacnatactagaaagtctta 113
| || |||||||| ||| ||||||||| ||||| || |||||||||||||
Sbjct: 68 tgcttagattcattagcatatatataaatgtggacaatgctagaaagtctta 17
Score = 69.9 bits (35), Expect = 4e-13
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 4 taagactttctagcattatccatattcatatatatgttaatgaatctaa--acatatatg 61
||||||||||||||||| |||| ||| ||||||||| |||||||||||| ||| ||||
Sbjct: 17 taagactttctagcattgtccacatttatatatatgctaatgaatctaagcacacatata 76
Query: 62 tgtctatattcattaacatctatataaata 91
||| || ||| ||| |||||||||| ||||
Sbjct: 77 tgtttagatttattgacatctatatgaata 106
>46464_miR1132:micropc
Length = 149
Score = 75.8 bits (38), Expect = 6e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtc 65
||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||
Sbjct: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
Query: 66 tatattcattaacatctatataaatatgg 94
|| |||||||||| |||||||||||||||
Sbjct: 83 tagattcattaacttctatataaatatgg 111
Score = 71.9 bits (36), Expect = 1e-13
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 10 tttctagcattatccatattcatatatatgttaatgaatctaa--acatatatgtgtcta 67
||||||||| || ||||||| ||||| | |||||||||||||| |||||||| || |||
Sbjct: 124 tttctagcactacccatatttatatagaagttaatgaatctaaacacatatatatgccta 65
Query: 68 tattcattaacatctatataaatatggacnatactagaaagt 109
||||||||| |||||||| |||||| | || |||||||||
Sbjct: 64 gattcattaatatctatatgaatatgtgcaatgctagaaagt 23
>45514_miR1132:micropc
Length = 149
Score = 75.8 bits (38), Expect = 6e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtc 65
||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||
Sbjct: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
Query: 66 tatattcattaacatctatataaatatgg 94
|| |||||||||| |||||||||||||||
Sbjct: 83 tagattcattaacttctatataaatatgg 111
Score = 71.9 bits (36), Expect = 1e-13
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 10 tttctagcattatccatattcatatatatgttaatgaatctaa--acatatatgtgtcta 67
||||||||| || ||||||| ||||| | |||||||||||||| |||||||| || |||
Sbjct: 124 tttctagcactacccatatttatatagaagttaatgaatctaaacacatatatatgccta 65
Query: 68 tattcattaacatctatataaatatggacnatactagaaagt 109
||||||||| |||||||| |||||| | || |||||||||
Sbjct: 64 gattcattaatatctatatgaatatgtgcaatgctagaaagt 23
>45099_miR1132:micropc
Length = 149
Score = 75.8 bits (38), Expect = 6e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtc 65
||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||
Sbjct: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
Query: 66 tatattcattaacatctatataaatatgg 94
|| |||||||||| |||||||||||||||
Sbjct: 83 tagattcattaacttctatataaatatgg 111
Score = 71.9 bits (36), Expect = 1e-13
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 10 tttctagcattatccatattcatatatatgttaatgaatctaa--acatatatgtgtcta 67
||||||||| || ||||||| ||||| | |||||||||||||| |||||||| || |||
Sbjct: 124 tttctagcactacccatatttatatagaagttaatgaatctaaacacatatatatgccta 65
Query: 68 tattcattaacatctatataaatatggacnatactagaaagt 109
||||||||| |||||||| |||||| | || |||||||||
Sbjct: 64 gattcattaatatctatatgaatatgtgcaatgctagaaagt 23
>46670_miR809:micropc
Length = 97
Score = 73.8 bits (37), Expect = 3e-14
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtctat 68
||||| ||||| ||| |||||||||||||||||||||| || |||||||| |||||||
Sbjct: 97 ttctaacattacccacattcatatatatgttaatgaatgtagacatatatgtgtgtctag 38
Query: 69 attcattaacatctat 84
||| ||||||||||||
Sbjct: 37 atttattaacatctat 22
Score = 40.1 bits (20), Expect = 3e-04
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 14 tagcattatccatattcatatatatgttaatgaatctaaacata--tatgtgtctatatt 71
||||||| || ||||||| ||| |||||||| |||||| ||| | ||| |||||| |||
Sbjct: 4 tagcattgtctatattca-atagatgttaataaatctagacacacatatatgtctacatt 62
Query: 72 cattaacatctatat 86
||||||||| |||||
Sbjct: 63 cattaacatatatat 77
>45731_miR446:micropc
Length = 86
Score = 73.8 bits (37), Expect = 3e-14
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 17 cattatccatattcatatatatgttaatgaatctaaacatata--tgtgtctatattcat 74
|||| |||| ||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct: 1 cattgtccacattcatatagattttaatgaatctaaacatatatgtgtgtctagattcat 60
Query: 75 taacatctatat 86
||||||| ||||
Sbjct: 61 taacatcaatat 72
Score = 42.1 bits (21), Expect = 9e-05
Identities = 60/72 (83%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 27 attcatatatatgttaatgaatct--aaacatatatgtgtctatattcattaacatctat 84
|||||||| |||||||||||||| | ||| |||| ||| || ||||||||| ||||||
Sbjct: 76 attcatattgatgttaatgaatctagacacacatatatgtttagattcattaaaatctat 17
Query: 85 ataaatatggac 96
|| ||| |||||
Sbjct: 16 atgaatgtggac 5
>44980_miR808:micropc
Length = 97
Score = 73.8 bits (37), Expect = 3e-14
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtctat 68
||||| ||||| ||| |||||||||||||||||||||| || |||||||| |||||||
Sbjct: 97 ttctaacattacccacattcatatatatgttaatgaatgtagacatatatgtgtgtctag 38
Query: 69 attcattaacatctat 84
||| ||||||||||||
Sbjct: 37 atttattaacatctat 22
Score = 40.1 bits (20), Expect = 3e-04
Identities = 63/75 (84%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 14 tagcattatccatattcatatatatgttaatgaatctaaacata--tatgtgtctatatt 71
||||||| || ||||||| ||| |||||||| |||||| ||| | ||| |||||| |||
Sbjct: 4 tagcattgtctatattca-atagatgttaataaatctagacacacatatatgtctacatt 62
Query: 72 cattaacatctatat 86
||||||||| |||||
Sbjct: 63 cattaacatatatat 77
>45687_miR819:micropc
Length = 84
Score = 71.9 bits (36), Expect = 1e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 1 ttataagactttctagcattatccatattcatatatatgttaatgaat 48
|||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 79 ttataagactttctagcattgcccacattcatatatatgttaatgaat 32
Score = 50.1 bits (25), Expect = 4e-07
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 69 attcattaacatctatataaatatggacnatactagaaagtcttataa 116
|||||||||||| ||||| ||| ||| | || ||||||||||||||||
Sbjct: 32 attcattaacatatatatgaatgtgggcaatgctagaaagtcttataa 79
>45215_miR1120:micropc
Length = 142
Score = 67.9 bits (34), Expect = 2e-12
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacata--tatgtgtc 65
||||||||||||| ||| ||||| |||||||||||||||||| | ||| |||||||
Sbjct: 20 actttctagcattgcccacgttcatttatatgttaatgaatctagatatatttatgtgtt 79
Query: 66 tatattcattaacatctatat 86
|| ||||||||||||||||||
Sbjct: 80 taaattcattaacatctatat 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 2 tataagactttctagcattatccatattcatatatatgttaatgaatctaaaca 55
||||||| |||||| |||| ||||| |||||| |||||||||||| ||||||
Sbjct: 129 tataagaatttctaacattgctcatatacatatagatgttaatgaatttaaaca 76
>46336_miR809:micropc
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatctaaacatatatgtgtctatat 70
|||||||||| | || |||||||| ||| |||||||||||| |||||||| | | || ||
Sbjct: 97 ttctagcatttttcacattcatatttatattaatgaatctagacatatatctatttaaat 38
Query: 71 tcattaacatctatataaatatggacnatactagaa 106
|||| || ||| |||||||||||| |||||||||
Sbjct: 37 tcatcaatatcaatataaatatggtgaatactagaa 2
>45839_miR809:micropc
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatctaaacatatatgtgtctatat 70
|||||||||| | || |||||||| ||| |||||||||||| |||||||| | | || ||
Sbjct: 97 ttctagcatttttcacattcatatttatattaatgaatctagacatatatctatttaaat 38
Query: 71 tcattaacatctatataaatatggacnatactagaa 106
|||| || ||| |||||||||||| |||||||||
Sbjct: 37 tcatcaatatcaatataaatatggtgaatactagaa 2
>46060_miR809:micropc
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatcta 51
|||||||||| ||||||||||||| |||||||||||||||
Sbjct: 2 ttctagcattttccatattcatattgatgttaatgaatcta 42
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 63 gtctatattcattaacatctatataaatatgga 95
||||| ||||||||||||| |||| ||||||||
Sbjct: 45 gtctagattcattaacatcaatatgaatatgga 13
>44937_miR819:micropc
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 1 ttataagactttctagcattatccatattcatatatat--gttaatgaatctaaacatat 58
||||||||||||||| ||| ||||||| |||||||| |||||||| |||| ||||||
Sbjct: 89 ttataagactttctattattgcccatatttatatatatatgttaatgagtctatacatat 30
Query: 59 atgtgt 64
||||||
Sbjct: 29 atgtgt 24
Score = 48.1 bits (24), Expect = 1e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 82 tatataaatatggacnatactagaaagtcttataa 116
||||||||||||| | ||| |||||||||||||||
Sbjct: 55 tatataaatatgggcaataatagaaagtcttataa 89
>46637_miR446:micropc
Length = 80
Score = 52.0 bits (26), Expect = 9e-08
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 28 ttcatatatatgttaatgaatctaaacatatatgtgt--ctatattcattaacatctata 85
||||||| ||||||||||||||| |||||||| | | ||| ||||||||||||| |||
Sbjct: 8 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 67
Query: 86 taaatatgg 94
| |||||||
Sbjct: 68 tgaatatgg 76
Score = 50.1 bits (25), Expect = 4e-07
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 23 ccatattcatatatatgttaatgaatcta--aacatatatgtgtctatattcattaacat 80
|||||||||||| ||||||||||||||| | |||||| |||||| ||||||||||||
Sbjct: 76 ccatattcatattgatgttaatgaatctagctagatatatatgtctagattcattaacat 17
>46801_miR809:micropc
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 37 atgttaatgaatctaaacatatat 60
||||||||||||||||||||||||
Sbjct: 73 atgttaatgaatctaaacatatat 50
Score = 46.1 bits (23), Expect = 6e-06
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 27 attcatatatatgttaatgaatctaaaca--tatatgtgtctatattcattaacatctat 84
|||||||| ||||||||||||||| | | ||||| ||| || ||||||||||||| ||
Sbjct: 18 attcatattaatgttaatgaatctagatagatatatatgtttagattcattaacatcaat 77
Query: 85 ataaat 90
||||||
Sbjct: 78 ataaat 83
>45708_miR809:micropc
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 68/82 (82%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatct--aaacatatatgtgtctat 68
||||| |||| | ||||||||||| || ||||||||||| | | |||||| ||||||
Sbjct: 2 ttctaacatttttcatattcatattgatattaatgaatctagatagatatatatgtctag 61
Query: 69 attcattaacatctatataaat 90
|||||||| |||| ||||||||
Sbjct: 62 attcattagcatcaatataaat 83
>46833_miR446:micropc
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 17 cattatccatattcatatatatgttaatgaatctaaacatatatgt--gtctatattcat 74
|||| |||| |||||||| |||||||||||| || | | |||||| ||||| ||||||
Sbjct: 81 cattttccacattcatattgatgttaatgaatttagatagatatgtatgtctagattcat 22
Query: 75 taacatctatata 87
||||||| |||||
Sbjct: 21 taacatcaatata 9
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/61 (85%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 37 atgttaatgaatctaaacat--atatgtgtctatattcattaacatctatataaatatgg 94
||||||||||||||| |||| |||| | |||| ||||||||||||| |||| ||| |||
Sbjct: 16 atgttaatgaatctagacatacatatctatctaaattcattaacatcaatatgaatgtgg 75
Query: 95 a 95
|
Sbjct: 76 a 76
>46758_miR808:micropc
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 23 ccatattcatatatatgttaatgaatctaaa--catatatgtgtctatattcattaacat 80
|||||||||||| ||||||||||||||| | |||||| |||||| |||| ||| |||
Sbjct: 86 ccatattcatattaatgttaatgaatctagatggatatatatgtctagattcgttagcat 27
Query: 81 ctatataaatatg 93
| |||| ||||||
Sbjct: 26 caatatgaatatg 14
>45603_miR819:micropc
Length = 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 ttataagactttctagcattatccatattcatat 34
|||||||||||||||||||| ||| ||||||||
Sbjct: 6 ttataagactttctagcattgcccacattcatat 39
>45522_miR809:micropc
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 11 ttctagcattatccatattcatatatatgttaatgaatctaaacata--tatgtgtctat 68
|||||||||| |||| |||| || ||||||||||||||| ||||| ||| | ||||
Sbjct: 2 ttctagcattttccacattcgtaatgatgttaatgaatctagacatatgtatctatctag 61
Query: 69 attcattaacatc 81
|||||||||||||
Sbjct: 62 attcattaacatc 74
>45342_miR809:micropc
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 61/73 (83%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 23 ccatattcatatatatgttaatgaatctaaa--catatatgtgtctatattcattaacat 80
|||||||||||| ||||||||||||||| | |||||| |||||| |||| ||| |||
Sbjct: 87 ccatattcatattaatgttaatgaatctagatggatatatatgtctagattcgttagcat 28
Query: 81 ctatataaatatg 93
| |||| ||||||
Sbjct: 27 caatatgaatatg 15
