miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 155 bits (78), Expect = 1e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 63
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 64 gtggcgtgcaaggagccaagca 85
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 99.6 bits (50), Expect = 5e-21
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 60
|||||||||||||| ||||||| ||||||||| || || ||| ||| |||||||||||||
Sbjct: 4 tgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtgg 62
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 63 gtggcgtgcaaggagccaagca 84
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 65.9 bits (33), Expect = 7e-11
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagcccaatcc--atggtgtgtttggatgctgt 58
|||||||||||||| ||||||| |||||||||||| || ||| | | ||| ||||||
Sbjct: 4 tgcctggctccctgtatgccacacatgtagcccaacccatatgctaaggttgcctgctgt 63
Query: 59 gggtggcgtgcaaggagccaagca 82
||||||||||||||| ||||||||
Sbjct: 64 gggtggcgtgcaaggggccaagca 87
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 60.0 bits (30), Expect = 4e-09
Identities = 72/84 (85%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgc--tgt 58
|||||||||||||| ||||||| ||||||| |||| ||||| |||| ||| ||| |
Sbjct: 4 tgcctggctccctgtatgccacacatgtagaccaacccatg--gtgtctggttgcctact 61
Query: 59 gggtggcgtgcaaggagccaagca 82
||||||||||||||||||||||||
Sbjct: 62 gggtggcgtgcaaggagccaagca 85
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 60
|||||||||||||| ||||||| |||| | |||||| ||| ||| |||| ||||||
Sbjct: 4 tgcctggctccctgtatgccacacatggacaccaatctttgg-gtgattggtgactgtgg 62
Query: 61 gtggcgtgcaaggagccaagca 82
|||| |||||||||||||||||
Sbjct: 63 gtggtgtgcaaggagccaagca 84
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 tgctgtgggtggcgtgcaaggagccaagca 82
||||||||||||||||||||| ||||||||
Sbjct: 60 tgctgtgggtggcgtgcaaggggccaagca 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcatgtagc 31
|||||||||||||| ||||||| ||||||||
Sbjct: 4 tgcctggctccctgtatgccacacatgtagc 34
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcat 26
|||||||||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccactcat 29
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcat 26
|||||||||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccactcat 29
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgcatgccactcat 26
|||||||||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccactcat 29
