miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54380_pvu-miR319c:pmrd
          Length = 734

 Score =  367 bits (185), Expect = e-102
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaaccactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggagcttccctcagcccattcatggatacaaaagattgggttgcaaaattaaccactaa 304

                                                                       
Query: 61  ctcattcacacaatagtattcagttagggtgatgctctttttgctataatatgattgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcattcacacaatagtattcagttagggtgatgctctttttgctataatatgattgtgt 364

                                                                       
Query: 121 gaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaatgaagtgatgcatacatattgtgtgaccctctttctctgagcttggactgaagggag 424

                
Query: 181 ctcct 185
           |||||
Sbjct: 425 ctcct 429




>48574_gma-miR319c:pmrd
          Length = 221

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 149 accctctttctctgagcttggactgaagggagctcct 185
           |||||||||||||| |||||||||||| |||||||||
Sbjct: 166 accctctttctctgtgcttggactgaaaggagctcct 202



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  aggagcttccctcagcccattcatgga 27
          |||||||||||||||||||||||||||
Sbjct: 21 aggagcttccctcagcccattcatgga 47




>51712_ptc-miR319f:pmrd
          Length = 202

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 150 ccctctttctctgagcttggactgaagggagctcct 185
           |||||||| |||| ||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctcct 193




>51351_ppl-miR319:pmrd
          Length = 204

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 150 ccctctttctctgagcttggactgaagggagctcct 185
           |||||||| |||| ||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctcct 193




>51710_ptc-miR319d:pmrd
          Length = 193

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 156 ttctctgagcttggactgaagggagctcc 184
           ||||||| |||||||||||||||||||||
Sbjct: 155 ttctctgtgcttggactgaagggagctcc 183




>51709_ptc-miR319c:pmrd
          Length = 196

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 156 ttctctgagcttggactgaagggagctcc 184
           ||||||| |||||||||||||||||||||
Sbjct: 158 ttctctgtgcttggactgaagggagctcc 186




>52451_ptc-miRf10629-akr:pmrd
          Length = 170

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 156 ttctctgagcttggactgaagggagctc 183
           ||||||| ||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctc 170




>51713_ptc-miR319g:pmrd
          Length = 204

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 159 tctgagcttggactgaagggagctcct 185
           |||| ||||||||||||||||||||||
Sbjct: 169 tctgtgcttggactgaagggagctcct 195




>54846_vvi-miR319f:pmrd
          Length = 193

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 159 tctgagcttggactgaagggagctcc 184
           |||| |||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180




>54844_vvi-miR319c:pmrd
          Length = 182

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 164 gcttggactgaagggagctcc 184
           |||||||||||||||||||||
Sbjct: 149 gcttggactgaagggagctcc 169




>54686_tae-miR319a:pmrd
          Length = 196

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 164 gcttggactgaagggagctcc 184
           |||||||||||||||||||||
Sbjct: 175 gcttggactgaagggagctcc 195




>51385_ppt-miR319b:pmrd
          Length = 160

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 cttggactgaagggagctcct 185
           |||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160




>46994_ath-miR319c:pmrd
          Length = 199

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 153 tctttctctgagcttggactgaagggagctcct 185
           ||||| |||| | ||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctcct 189




>46993_ath-miR319b:pmrd
          Length = 172

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 164 gcttggactgaagggagctcc 184
           |||||||||||||||||||||
Sbjct: 150 gcttggactgaagggagctcc 170




>54845_vvi-miR319e:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 ttggactgaagggagctcct 185
           ||||||||||||||||||||
Sbjct: 77  ttggactgaagggagctcct 96




>54843_vvi-miR319b:pmrd
          Length = 194

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181




>54583_smo-miR319:pmrd
          Length = 215

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204




>52398_ptc-miRf10576-akr:pmrd
          Length = 192

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 ttggactgaagggagctcct 185
           ||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183




>51714_ptc-miR319h:pmrd
          Length = 195

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 ttggactgaagggagctcct 185
           ||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184




>51711_ptc-miR319e:pmrd
          Length = 192

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 ttggactgaagggagctcct 185
           ||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183




>51707_ptc-miR319a:pmrd
          Length = 188

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178




>51390_ppt-miR319e:pmrd
          Length = 174

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166




>51389_ppt-miR319d:pmrd
          Length = 170

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164




>51388_ppt-miR319d:pmrd
          Length = 170

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164




>51387_ppt-miR319d:pmrd
          Length = 170

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164




>51386_ppt-miR319c:pmrd
          Length = 189

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173




>51384_ppt-miR319a:pmrd
          Length = 169

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167




>48687_ltu-miR319:pmrd
          Length = 167

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166




>48573_gma-miR319b:pmrd
          Length = 208

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188




>48572_gma-miR319a:pmrd
          Length = 207

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187




>46884_aqc-miR319:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 cttggactgaagggagctcc 184
           ||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173