miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 73.8 bits (37), Expect = 7e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 98 tttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttggactgaag 157
|||||||||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||
Sbjct: 115 tttttgatccaacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaag 174
Query: 158 ggagctccc 166
|||||||||
Sbjct: 175 ggagctccc 183
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 69.9 bits (35), Expect = 1e-11
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 92 gatgtgtttttgatccaacgatgcgggagccgtgtttggttctgtctgtctcgtcttgga 151
||||| ||||||||||||||| || ||||| ||||| ||| || ||||| ||||||||
Sbjct: 105 gatgtctttttgatccaacgaagctggagctgtgttcagttatggctgtcatgtcttgga 164
Query: 152 ctgaagggagctccc 166
|||||||||||||||
Sbjct: 165 ctgaagggagctccc 179
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggagctctcttcagtccagtccaag 25
|||||||||||||||||||||||||
Sbjct: 12 ggagctctcttcagtccagtccaag 36
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 143 cgtcttggactgaagggagctccc 166
||||||||||||||||||||||||
Sbjct: 196 cgtcttggactgaagggagctccc 219
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ggagctctcttcagtccagtcc 22
||||||||||||||||||||||
Sbjct: 12 ggagctctcttcagtccagtcc 33
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctccc 166
||||||||||||||||||||||
Sbjct: 148 tcttggactgaagggagctccc 169
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctccc 166
||||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctccc 168
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 tcttggactgaagggagctccc 166
||||||||||||||||||||||
Sbjct: 149 tcttggactgaagggagctccc 170
