miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacgtagagacc 32
||||||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacacgtagagacc 36
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 69/82 (84%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacgtagagacccatc---tgtttatgatcggctactgcg 57
|||||||||||||||||||||| | | ||||| ||| ||||| ||| |||| |||
Sbjct: 5 gcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgttgcc 64
Query: 58 ggtggcgtgcgaggagccaagc 79
||||||||||||||||||||||
Sbjct: 65 ggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 ctactgcgggtggcgtgcgaggagccaagc 79
||||||||| ||||||||||||||||||||
Sbjct: 73 ctactgcggatggcgtgcgaggagccaagc 102
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 ctactgcgggtggcgtgcgaggagccaagc 79
||||||||| ||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagc 132
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 ctactgcgggtggcgtgcgaggagccaagc 79
|||| |||||||||||||||||||||||||
Sbjct: 57 ctacggcgggtggcgtgcgaggagccaagc 86
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacacgtaga 28
|||||||||||||||||||||| |||||
Sbjct: 5 gcctggctccctgtatgccacaagtaga 32
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 ggctactgcgggtggcgtgcgaggagccaagc 79
|||| |||| ||||||||||||||||||||||
Sbjct: 55 ggctgctgccggtggcgtgcgaggagccaagc 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 4 gcctggctccctgtatgccaca 25
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 48 ggctactgcgggtggcgtgcgaggagccaagc 79
||||| ||| ||||||||||||||||||||||
Sbjct: 55 ggctattgccggtggcgtgcgaggagccaagc 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccacac 23
|||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccacac 27
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ggtggcgtgcgaggagccaagc 79
||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagc 84
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccaca 22
||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccaca 26
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 actgcgggtggcgtgcgaggagccaa 77
||||||| ||||||||||||||||||
Sbjct: 72 actgcggatggcgtgcgaggagccaa 97
