miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 70
Query: 61 atagatggttcataggcagtctccttggct 90
||||||||||||||||||||||||||||||
Sbjct: 71 atagatggttcataggcagtctccttggct 100
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 89.7 bits (45), Expect = 6e-18
Identities = 80/90 (88%), Gaps = 5/90 (5%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 60
||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 106 agccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg-- 50
Query: 61 atagatggttcataggcagtctccttggct 90
|| |||||||||||||||||||||||||
Sbjct: 49 --agttggttcataggcagtctccttggct 22
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 89.7 bits (45), Expect = 6e-18
Identities = 80/90 (88%), Gaps = 5/90 (5%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 60
||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg-- 57
Query: 61 atagatggttcataggcagtctccttggct 90
|| |||||||||||||||||||||||||
Sbjct: 58 --agttggttcataggcagtctccttggct 85
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtgtcctt 27
|||||||||||||||||||||||||||
Sbjct: 107 agccaaggatgacttgcctgtgtcctt 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 66 tggttcataggcagtctccttggct 90
|||||||||||||||||||||||||
Sbjct: 46 tggttcataggcagtctccttggct 22
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtgtcctt 27
|||||||||||||||||||||||||||
Sbjct: 120 agccaaggatgacttgcctgtgtcctt 94
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcctt 27
|||||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgcctgtgtcctt 41
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 tggttcataggcagtctccttggct 90
|||||||||||||||||||||||||
Sbjct: 76 tggttcataggcagtctccttggct 100
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcctt 27
|||||||||||||||||||||||||||
Sbjct: 10 agccaaggatgacttgcctgtgtcctt 36
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtgtcct 26
||||||||||||||||||||||||||
Sbjct: 107 agccaaggatgacttgcctgtgtcct 82
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcctttgt 30
||||||||||||||||||| ||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgt 30
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtcct 26
||||||||||||||||||||||||||
Sbjct: 11 agccaaggatgacttgcctgtgtcct 36
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtgtc 24
||||||||||||||||||||||||
Sbjct: 123 agccaaggatgacttgcctgtgtc 100
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtgtc 24
||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgcctgtgtc 38
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 112 agccaaggatgacttgcctgtg 91
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 133 agccaaggatgacttgcctgtg 112
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 127 agccaaggatgacttgcctgtg 106
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 132 agccaaggatgacttgcctgtg 111
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 154 agccaaggatgacttgcctgtg 133
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtg 22
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctgtg 35
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 17 agccaaggatgacttgcctgtg 38
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctgtg 22
||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgcctgtg 35
