miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51324_pco-miR167:pmrd
Length = 69
Score = 129 bits (65), Expect = 2e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 62
Query: 61 agttt 65
|||||
Sbjct: 63 agttt 67
>51648_ptc-miR167g:pmrd
Length = 86
Score = 73.8 bits (37), Expect = 1e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
|||||||||||||||||||||| |||||| ||| || ||||| ||| |||||||||||||
Sbjct: 13 aagctgccagcatgatcttaacctccctc-ctttgtcgaggaaagaacagatcatgtggc 71
Query: 61 agttt 65
|||||
Sbjct: 72 agttt 76
>54801_vvi-miR167e:pmrd
Length = 90
Score = 58.0 bits (29), Expect = 7e-10
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtggc 60
|||||||||||||||||| ||||| | || ||| || || |||||||||||||||||||
Sbjct: 13 aagctgccagcatgatctaaacttgcttccctttgt-gaacagagatcagatcatgtggc 71
Query: 61 agttt 65
|||||
Sbjct: 72 agttt 76
>51647_ptc-miR167f:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccctcacttggttgaggagag-atcagatcatgtgg 59
|||||||||||||||||||| | | |||| ||| |||||||| || | ||||||||||||
Sbjct: 13 aagctgccagcatgatcttagccttcctc-ctttgttgaggaaagaaacagatcatgtgg 71
Query: 60 cagttt 65
||||||
Sbjct: 72 cagttt 77
>54799_vvi-miR167c:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaacttccct 28
|||||||||||||||||| |||||||||
Sbjct: 13 aagctgccagcatgatctcaacttccct 40
>54545_sly-miR167:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gaggagagatcagatcatgtggcag 62
||||| |||||||||||||||||||
Sbjct: 68 gaggaaagatcagatcatgtggcag 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaactt 24
|||||||||||||||||| |||||
Sbjct: 21 aagctgccagcatgatctaaactt 44
>51646_ptc-miR167e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaactt 24
|||||||||||||||||| |||||
Sbjct: 13 aagctgccagcatgatctgaactt 36
>48420_cle-miR167:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatcttaactt 24
|||||||||||||||||| |||||
Sbjct: 13 aagctgccagcatgatctgaactt 36
>48147_ath-miRf11047-akr:pmrd
Length = 136
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctt 19
|||||||||||||||||||
Sbjct: 1 aagctgccagcatgatctt 19
>46954_ath-miR167c:pmrd
Length = 160
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 aagctgccagcatgatctt 19
|||||||||||||||||||
Sbjct: 13 aagctgccagcatgatctt 31
