miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 123 bits (62), Expect = 8e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 60
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 tcctcagtcctatctatt 78
||||||| ||||||||||
Sbjct: 73 tcctcagccctatctatt 90
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 20 agaggatctaacaggtaagattaagctgctgacctatggattcctcagtcctatctatt 78
||||||||||| ||| || ||| ||||||||| |||||||| ||||| |||||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaatcctatctatt 90
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 60
|||||||||||||||||| ||||| ||| || || ||||| |||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 tcctcagtcctatc 74
|| ||| ||||||
Sbjct: 73 cccacagccctatc 86
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 58.0 bits (29), Expect = 4e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 60
|||||||||||||||||| ||||| ||| | || ||||||||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga- 71
Query: 61 tcctcagtcctatctat 77
||| |||||||||||||
Sbjct: 72 tccacagtcctatctat 88
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 50.1 bits (25), Expect = 9e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 60
|||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 tcctcagtcctat 73
|| ||| |||||
Sbjct: 73 cccacagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 60
|||||||||||||||||| ||||||| | |||| |||| |||||| || ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 tcctcagtccta 72
||| ||| ||||
Sbjct: 73 tccacagcccta 84
