miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 54 gcattcctatagtgtgctccatgccaaaggagatttgccc 93
|||||||||| |||||| |||||||||||||||||||||
Sbjct: 57 gcattcctatcgtgtgcatcatgccaaaggagatttgccc 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gggcaaaacctccattggcatgcagccacactaagat 37
||||||||||| ||||||||||| |||| ||||||||
Sbjct: 13 gggcaaaaccttcattggcatgctgccagactaagat 49
>RF00445;mir-399;AARH01004856.1/144755-144865 3694:Populus
trichocarpa
Length = 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gggcaaaacctccattggcatgcagc 26
||||||||||||||||||||||||||
Sbjct: 13 gggcaaaacctccattggcatgcagc 38
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 agtgtgctccatgccaaaggagatttgccc 93
|||||| ||| |||||||||||||||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgccc 105
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ccatgccaaaggagatttgccc 93
||||||||||||||||||||||
Sbjct: 89 ccatgccaaaggagatttgccc 110
