miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51346_ppe-miR171:pmrd
Length = 97
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 69
Query: 61 ttgagccgtgccaatat 77
|||||||||||||||||
Sbjct: 70 ttgagccgtgccaatat 86
>51345_ppe-miR170:pmrd
Length = 97
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 69
Query: 61 ttgagccgtgccaatat 77
|||||||||||||||||
Sbjct: 70 ttgagccgtgccaatat 86
>54836_vvi-miR171i:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 atgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttga 60
||||||| |||||||||||||||||| || ||| ||| |||||||||||||| |||
Sbjct: 14 atgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctga 71
Query: 61 ttgagccgtgccaatat 77
|||||||||||||||||
Sbjct: 72 ttgagccgtgccaatat 88
>46877_aqc-miR171b:pmrd
Length = 77
Score = 63.9 bits (32), Expect = 1e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 42 attgggtcctttaatttgattgagccgtgccaatat 77
||||||||||||||| ||||||||||||||||||||
Sbjct: 39 attgggtcctttaatctgattgagccgtgccaatat 74
>54828_vvi-miR171a:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 gtcctttaatttgattgagccgtgccaatat 77
|||||||||| ||||||||||||||||||||
Sbjct: 57 gtcctttaatctgattgagccgtgccaatat 87
>51691_ptc-miR171h:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
||||||| |||||| ||||||||||||||||||||
Sbjct: 56 ttgggtcgtttaatctgattgagccgtgccaatat 90
>51690_ptc-miR171g:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
||||||| |||||| ||||||||||||||||||||
Sbjct: 56 ttgggtcttttaatctgattgagccgtgccaatat 90
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
|||||| |||| || ||||||||||||||||||||
Sbjct: 45 ttgggttctttcatctgattgagccgtgccaatat 79
>51692_ptc-miR171i:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 atttgattgagccgtgccaatat 77
|||||||||||||||||||||||
Sbjct: 97 atttgattgagccgtgccaatat 119
>51688_ptc-miR171e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 ttgggtcctttaatttgattgagccgtgccaatat 77
|||||| |||| || ||||||||||||||||||||
Sbjct: 50 ttgggttctttcatctgattgagccgtgccaatat 84
>46979_ath-miR171c:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 atttgattgagccgtgccaatat 77
|||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatat 106
>55029_zma-miR171b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81
>54831_vvi-miR171d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatat 86
>54830_vvi-miR171c:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatat 89
>54551_sly-miR171a:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatat 106
>54462_sbi-miR171k:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81
>54452_sbi-miR171a:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatat 141
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatat 82
>51685_ptc-miR171b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatat 90
>51684_ptc-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatat 91
>48897_osa-miR171c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatat 88
>48896_osa-miR171b:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatat 89
>48723_mtr-miR171g:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
>48722_mtr-miR171d:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
>48403_bra-miR171a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatat 81
>48386_bol-miR171a:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87
>48367_bna-miR171e:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatat 86
>48366_bna-miR171d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatat 87
>48312_bdi-miR171c:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatat 83
>46880_aqc-miR171e:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatat 2
>46879_aqc-miR171d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatat 103
>46876_aqc-miR171a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 tttgattgagccgtgccaatat 77
||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatat 99
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 ttgattgagccgtgccaatat 77
|||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatat 112
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 ttgattgagccgtgccaatat 77
|||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatat 84
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 ttgattgagccgtgccaatat 77
|||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatat 134
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 ttgattgagccgtgccaatat 77
|||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatat 114
>55037_zma-miR171j:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatat 109
>55032_zma-miR171e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatat 106
>55031_zma-miR171d:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatat 101
>54680_tae-miR170b:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatat 93
>54460_sbi-miR171i:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatat 87
>54455_sbi-miR171d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatat 134
>54453_sbi-miR171b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatat 112
>51689_ptc-miR171f:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatat 120
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatat 114
>48905_osa-miR171n:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatat 98
>48904_osa-miR171m:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatat 106
>48900_osa-miR171f:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatat 116
>48899_osa-miR171e:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatat 108
>48898_osa-miR171d:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatat 124
>48894_osa-miR170b:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatat 106
>48893_osa-miR170a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatat 98
>48663_hvv-miR171:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatat 77
>48662_hvv-miR170:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatat 77
||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatat 77
