miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46865_aqc-miR160b:pmrd
Length = 82
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggatg 61
Query: 61 gcgtgcgaggagccatgc 78
||||||||||||||||||
Sbjct: 62 gcgtgcgaggagccatgc 79
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggatg 60
||||||||||||||||||||| |||| || |||| |||| | |||| ||| |||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcgagta-tcgatgacctccgtggatg 63
Query: 61 gcgtgcgaggagccatgc 78
|||| ||||||||||||
Sbjct: 64 gcgtatgaggagccatgc 81
>46934_ath-miR160a:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggatg 60
||||||||||||||||||||| |||| || |||| |||| | |||| ||| |||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcgagta-tcgatgacctccgtggatg 63
Query: 61 gcgtgcgaggagccatgc 78
|||| ||||||||||||
Sbjct: 64 gcgtatgaggagccatgc 81
>54783_vvi-miR160f:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccatttgc 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 44 gatggcctttgtggatggcgtgcgaggagccatgc 78
||||||||| ||||||||||| ||||||||||||
Sbjct: 55 gatggccttcgtggatggcgtatgaggagccatgc 89
>54781_vvi-miR160d:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccatttgc 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagccatgc 78
|||||||||||||||||||||||
Sbjct: 67 ggatggcgtgcgaggagccatgc 89
>54541_sly-miR160a:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 21 gcctggctccctgtatgccatttgc 45
>51610_ptc-miR160c:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccatttgc 36
>51609_ptc-miR160b:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccatttgc 36
Score = 38.2 bits (19), Expect = 9e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 44 gatggcctttgtggatggcgtgcgaggagccatgc 78
|||||||| ||||||||||| ||||||||||||
Sbjct: 55 gatggcctccgtggatggcgtatgaggagccatgc 89
>48703_mtr-miR160d:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgccatttg 30
>48542_gma-miR160a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgccatttg 45
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 49 cctttgtggatggcgtgcgaggagcca 75
|||||||||||||||| |||||||||
Sbjct: 70 cctttgtggatggcgtatgaggagcca 96
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgccat 32
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttag 29
|||||||||||||||||||| | ||||||
Sbjct: 2 gcctggctccctgtatgccactcgcttag 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagcca 75
||||||||||||||||||||
Sbjct: 77 ggatggcgtgcgaggagcca 96
>51615_ptc-miR160h:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
||||||||||||| |||||||||||
Sbjct: 12 gcctggctccctgcatgccatttgc 36
>51363_ppt-miR160e:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||| ||||
Sbjct: 31 gcctggctccctgtatgccacttgc 55
>48791_oba-miR160:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttag 29
|||||||||||||||||||| | ||||||
Sbjct: 5 gcctggctccctgtatgccactggcttag 33
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgccat 27
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 49 cctttgtggatggcgtgcgaggagcca 75
|||||||||||||||| |||||||||
Sbjct: 55 cctttgtggatggcgtatgaggagcca 81
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgccat 27
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 49 cctttgtggatggcgtgcgaggagcca 75
|||||||||||||||| |||||||||
Sbjct: 55 cctttgtggatggcgtatgaggagcca 81
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgccat 47
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgccat 47
>54947_zma-miR160m:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54946_zma-miR160i:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 3 gcctggctccctgtatgcca 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54942_zma-miR160e:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 10 gcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>54940_zma-miR160c:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 11 gcctggctccctgtatgcca 30
>54780_vvi-miR160c:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54675_tae-miR160:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 23 gcctggctccctgtatgcca 42
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagcca 75
||||||||||||||||||||
Sbjct: 88 ggatggcgtgcgaggagcca 107
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 14 gcctggctccctgtatgcca 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 13 gcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>51364_ppt-miR160f:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>51360_ppt-miR160b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51359_ppt-miR160a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagcca 75
||||||||||||||||||||
Sbjct: 107 ggatggcgtgcgaggagcca 126
>48832_osa-miR160m:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>48829_osa-miR160d:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 9 gcctggctccctgtatgcca 28
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagcca 75
||||||||||||||||||||
Sbjct: 114 ggatggcgtgcgaggagcca 133
>48828_osa-miR160c:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>48658_hvv-miR160a:pmrd
Length = 344
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 325 gcctggctccctgtatgcca 344
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
>46936_ath-miR160c:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgcca 20
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
