miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 212 bits (107), Expect = 9e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 16 gttaaggggattgttgtctggttcaaggtctccacattgtgcaaaatgttcattcatgga 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttaaggggattgttgtctggttcaaggtctccacattgtgcaaaatgttcattcatgga 60
Query: 76 ggcacaggatgcttggtgatctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggcacaggatgcttggtgatctcggaccaggcttcaatccctttaac 107
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 93 gatctcggaccaggcttcaatccctttaac 122
||||||||||||||||||||||||||||||
Sbjct: 77 gatctcggaccaggcttcaatccctttaac 106
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 93 gatctcggaccaggcttcaatccctttaac 122
||||||||||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcaatccctttaac 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 gttaaggggattgttgtctggttcaaggtctccaca 51
||||| ||| |||||||||||||||||||| |||||
Sbjct: 1 gttaatggggttgttgtctggttcaaggtcgccaca 36
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 ctcggaccaggcttcaatccctttaac 122
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcaatccctttaac 122
||||||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcaatccctttaac 105
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 89 tggtgatctcggaccaggcttcaatccctttaac 122
|||||| |||||||||||||||| ||||||||||
Sbjct: 108 tggtgacctcggaccaggcttcattccctttaac 141
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 89 tggtgatctcggaccaggcttcaatccctttaac 122
|||||| |||||||||||||||| ||||||||||
Sbjct: 109 tggtgacctcggaccaggcttcattccctttaac 142
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 gttaaggggattgttgtctggttcaaggtctcc 48
||||||||| |||||||||||||||||| ||||
Sbjct: 1 gttaaggggtttgttgtctggttcaaggcctcc 33
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 ttaaggggattgttgtctggttcaagg 43
||||||||| |||||||||||||||||
Sbjct: 2 ttaaggggaatgttgtctggttcaagg 28
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 gtgatctcggaccaggcttcaatccc 116
||||||||||||||||||||| ||||
Sbjct: 94 gtgatctcggaccaggcttcattccc 119
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 gtgatctcggaccaggcttcaatccc 116
||||||||||||||||||||| ||||
Sbjct: 63 gtgatctcggaccaggcttcattccc 88
