miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48582_gma-miR398b:pmrd
Length = 135
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 aggagtggatctgagaacacaaggctggtttgcactgctatattatgatcgattggtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 aggagtggatctgagaacacaaggctggtttgcactgctatattatgatcgattggtata 81
Query: 61 aggtgaatttactttgtgttctcaggtcacccct 94
||||||||||||||||||||||||||||||||||
Sbjct: 82 aggtgaatttactttgtgttctcaggtcacccct 115
>48581_gma-miR398a:pmrd
Length = 116
Score = 135 bits (68), Expect = 6e-33
Identities = 88/94 (93%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 aggagtggatctgagaacacaaggctggtttgcactgctatattatgatcgattggtata 60
||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 6 aggagtgaatctgagaacacaaggctggtttgcactgctatatcat---ctattggtata 62
Query: 61 aggtgaatttactttgtgttctcaggtcacccct 94
||||||||||||||||||||||||||||||||||
Sbjct: 63 aggtgaatttactttgtgttctcaggtcacccct 96
>54874_vvi-miR398a:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tttgtgttctcaggtcacccct 94
||||||||||||||||||||||
Sbjct: 71 tttgtgttctcaggtcacccct 92
>47012_ath-miR398a:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tttgtgttctcaggtcacccct 94
||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccct 94
>46889_aqc-miR398a:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 tttgtgttctcaggtcacccct 94
||||||||||||||||||||||
Sbjct: 64 tttgtgttctcaggtcacccct 85
>48511_ghr-miR398:pmrd
Length = 67
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ttgtgttctcaggtcacccct 94
|||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccct 66
>48391_bol-miR398a:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ttgtgttctcaggtcacccct 94
|||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccct 90
>48390_bol-miR398a:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 ttgtgttctcaggtcacccct 94
|||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccct 90
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgtgttctcaggtcacccct 94
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>51744_ptc-miR398a:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgtgttctcaggtcacccct 94
||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccct 99
>48962_osa-miR398a:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgtgttctcaggtcacccct 94
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47014_ath-miR398c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgtgttctcaggtcacccct 94
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47013_ath-miR398b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tgtgttctcaggtcacccct 94
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
