miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaactt 39
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 agatcagatcatgtggcagtttca 76
||||||||||||||||||||||||
Sbjct: 57 agatcagatcatgtggcagtttca 80
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactttcc 29
|||||||||||||||||||| ||||||||
Sbjct: 14 tgaagctgccagcatgatctaaactttcc 42
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactttcc 29
|||||||||||||||||||| ||||||||
Sbjct: 14 tgaagctgccagcatgatctgaactttcc 42
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 gagatcagatcatgtggcagtttca 76
|||||||||||||||||||||||||
Sbjct: 57 gagatcagatcatgtggcagtttca 81
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactttcc 29
|||||||||||||||||||| ||||||||
Sbjct: 14 tgaagctgccagcatgatctaaactttcc 42
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 gagatcagatcatgtggcagtttca 76
|||||||||||||||||||||||||
Sbjct: 57 gagatcagatcatgtggcagtttca 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaac 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaac 37
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttt 27
|||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttt 40
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctta 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctcaactt 39
