miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51346_ppe-miR171:pmrd
Length = 97
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 68
Query: 61 attgagccgtgccaatatc 79
|||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 68
Query: 61 attgagccgtgccaatatc 79
|||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatc 87
>54836_vvi-miR171i:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 6e-14
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 60
|||||||| |||||||||||||||||| || ||| ||| |||||||||||||| ||
Sbjct: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctg 70
Query: 61 attgagccgtgccaatatc 79
|||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatc 89
>46877_aqc-miR171b:pmrd
Length = 77
Score = 65.9 bits (33), Expect = 4e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 43 attgggtcctttaatttgattgagccgtgccaatatc 79
||||||||||||||| |||||||||||||||||||||
Sbjct: 39 attgggtcctttaatctgattgagccgtgccaatatc 75
>54828_vvi-miR171a:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 gtcctttaatttgattgagccgtgccaatatc 79
|||||||||| |||||||||||||||||||||
Sbjct: 57 gtcctttaatctgattgagccgtgccaatatc 88
>51691_ptc-miR171h:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 ttgggtcctttaatttgattgagccgtgccaatatc 79
||||||| |||||| |||||||||||||||||||||
Sbjct: 56 ttgggtcgtttaatctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 44 ttgggtcctttaatttgattgagccgtgccaatatc 79
||||||| |||||| |||||||||||||||||||||
Sbjct: 56 ttgggtcttttaatctgattgagccgtgccaatatc 91
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 44 ttgggtcctttaatttgattgagccgtgccaatatc 79
|||||| |||| || |||||||||||||||||||||
Sbjct: 45 ttgggttctttcatctgattgagccgtgccaatatc 80
>51692_ptc-miR171i:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 atttgattgagccgtgccaatatc 79
||||||||||||||||||||||||
Sbjct: 97 atttgattgagccgtgccaatatc 120
>51688_ptc-miR171e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 44 ttgggtcctttaatttgattgagccgtgccaatatc 79
|||||| |||| || |||||||||||||||||||||
Sbjct: 50 ttgggttctttcatctgattgagccgtgccaatatc 85
>46979_ath-miR171c:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 atttgattgagccgtgccaatatc 79
||||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatatc 107
>55029_zma-miR171b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>54831_vvi-miR171d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>54830_vvi-miR171c:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>54551_sly-miR171a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>54462_sbi-miR171k:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatc 83
>51685_ptc-miR171b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>48897_osa-miR171c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>48723_mtr-miR171g:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>48403_bra-miR171a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>46880_aqc-miR171e:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgtgccaatatc 79
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>55039_zma-miR171m:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ttgattgagccgtgccaatatc 79
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ttgattgagccgtgccaatatc 79
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ttgattgagccgtgccaatatc 79
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>55024_zma-miR170m:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ttgattgagccgtgccaatatc 79
||||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatatc 115
>55037_zma-miR171j:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>55032_zma-miR171e:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54460_sbi-miR171i:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>54453_sbi-miR171b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>51689_ptc-miR171f:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatc 117
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgccaatatc 79
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
