miRNEST 2.0, an integrative microRNA resource :: BLAST
>41252_csi-MIR408:mirbase
Length = 153
Score = 188 bits (95), Expect = 5e-49
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 gagacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gagacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgtttt 109
Query: 61 ggctcctcccatgcgctgcctcttccctggctctctgcc 99
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 110 ggctcctcccatgcactgcctcttccctggctctctgcc 148
>41463_ptc-MIR408:mirbase
Length = 105
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/87 (88%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 65
|||||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70
Query: 66 ctcccatgcgctgcctcttccctggct 92
||||||| |||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggct 97
>40108_ath-MIR408:mirbase
Length = 218
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 52 ctctgttttggctcctcccatgcgctgcctcttccctggctc 93
|||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142
>39897_aly-MIR408:mirbase
Length = 211
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 52 ctctgttttggctcctcccatgcgctgcctcttccctggctc 93
|||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 98 ctctgttttgtctctacccatgcactgcctcttccctggctc 139
>41683_vvi-MIR408:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcgctgcctcttccctggctct 94
||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggaaccattaacag 48
|||||||||| ||| || ||||||||||||| ||||||||
Sbjct: 7 aagacggggacgaggtagtgcatggatggaactattaacag 47
>40391_rco-MIR408:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 tctgttttggctcctcccatgcgctgcctcttccctggct 92
||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 49 tctgttttggctctacccctgcactgcctcttccctggct 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 aaagacggggaacaggcagagcatggatgg 36
|||||| |||||||||||| ||||||||||
Sbjct: 1 aaagactgggaacaggcagtgcatggatgg 30
>40405_ahy-MIR408:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 catgcgctgcctcttccctggctctct 96
||||| |||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctctct 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggaac 39
|||||||||||||||||| |||||||
Sbjct: 23 gggaacaggcagagcatgaatggaac 48
>40404_ahy-MIR408:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 catgcgctgcctcttccctggctctct 96
||||| |||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctctct 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggaac 39
|||||||||||||||||| |||||||
Sbjct: 23 gggaacaggcagagcatgaatggaac 48
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tcctcccatgcgctgcctcttccctggctc 93
||||||| ||| ||||||||||||||||||
Sbjct: 219 tcctcccctgcactgcctcttccctggctc 248
>42464_sof-MIR408c:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tcctcccatgcgctgcctcttccctggctc 93
||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>42463_sof-MIR408b:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tcctcccatgcgctgcctcttccctggctc 93
||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>42462_sof-MIR408a:mirbase
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tcctcccatgcgctgcctcttccctggctc 93
||||||| ||| ||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266
>42830_zma-MIR408b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 65 cctcccatgcgctgcctcttccctggctc 93
|||||| ||| ||||||||||||||||||
Sbjct: 119 cctcccctgcactgcctcttccctggctc 147
>42829_zma-MIR408:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 65 cctcccatgcgctgcctcttccctggctc 93
|||||| ||| ||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 tcctcccatgcgctgcctcttccctggct 92
||||||| ||| |||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205
>42052_osa-MIR408:mirbase
Length = 213
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 65 cctcccatgcgctgcctcttccctggctc 93
|||||| ||| ||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175
>41193_aqc-MIR408:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 69 ccatgcgctgcctcttccctggct 92
|||||| |||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
