miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 79.8 bits (40), Expect = 6e-15
Identities = 77/87 (88%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 65
|||||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 16 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 74
Query: 66 ctcccatgcgctgcctcttccctggct 92
||||||| |||||||||||||||||
Sbjct: 75 tacccatgcactgcctcttccctggct 101
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcgctgcctcttccctggctct 94
||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggctct 110
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 tctgttttggctcctcccatgcgctgcctcttccctggct 92
||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 63 tctgttttggctctacccctgcactgcctcttccctggct 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 aaagacggggaacaggcagagcatggatgg 36
|||||| |||||||||||| ||||||||||
Sbjct: 15 aaagactgggaacaggcagtgcatggatgg 44
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcgctgcctcttccctggct 92
||||| ||||||| | ||||| |||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggaaccattaaca 47
||||| |||||||||||||||||| ||||||||
Sbjct: 23 gggaagaggcagagcatggatggagtcattaaca 56
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 cccatgcgctgcctcttccctggctc 93
||||||| ||||||||||||||||||
Sbjct: 84 cccatgcactgcctcttccctggctc 109
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 tctgttttggctcctcccatgcgctgcctcttccctggctct 94
|||||| ||||| | | ||||| |||||||||||||||||||
Sbjct: 100 tctgttgtggctacgctcatgcactgcctcttccctggctct 141
