miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 115 bits (58), Expect = 2e-25
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 ggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgga 60
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgga 71
Query: 61 taccacagccctat 74
| ||||||||||||
Sbjct: 72 tcccacagccctat 85
Score = 111 bits (56), Expect = 4e-24
Identities = 76/82 (92%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 111 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 170
|||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagcttcattaccttgta---ttagatcct 159
Query: 171 tgtttggattgaagggagctct 192
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 9e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 2 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 61
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 62 accacagcccta 73
|||||||||||
Sbjct: 73 tccacagcccta 84
Score = 60.0 bits (30), Expect = 1e-08
Identities = 67/77 (87%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 116 taggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttgttt 175
|||||||| || ||||||||||| |||||| ||||||| || | ||| ||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattacccta--agctta-atccttgttt 164
Query: 176 ggattgaagggagctct 192
|||||||||||||||||
Sbjct: 165 ggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 ggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgga 60
|||||||||| |||||||||||||| |||| | ||||||||||||||||||| ||||||
Sbjct: 12 ggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgga 71
Query: 61 taccacagccctatccc 77
| |||||||||||||||
Sbjct: 72 tcccacagccctatccc 88
Score = 87.7 bits (44), Expect = 5e-17
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 111 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 170
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 103 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 159
Query: 171 tgtttggattgaagggagctct 192
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 85.7 bits (43), Expect = 2e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 ggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgga 60
|||||||||| |||||||||||||| |||||| ||||||||| ||||||| |||||||||
Sbjct: 12 ggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgga 71
Query: 61 taccacagccctatc 75
| |||||| ||||||
Sbjct: 72 t-ccacagtcctatc 85
Score = 67.9 bits (34), Expect = 5e-11
Identities = 69/80 (86%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 113 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 172
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 173 tttggattgaagggagctct 192
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 83.8 bits (42), Expect = 8e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 2 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 61
||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 62 accacagccctatc 75
|||||||||||||
Sbjct: 61 cccacagccctatc 74
Score = 67.9 bits (34), Expect = 5e-11
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 125 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 184
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 157
Query: 185 ggagctct 192
||||||||
Sbjct: 158 ggagctct 165
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 77.8 bits (39), Expect = 5e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1 ggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgga 60
|||||||||| |||||||| ||| ||||| |||| |||||||||||||||| |||||||
Sbjct: 12 ggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgga 71
Query: 61 taccacagccctatc 75
| || ||||||||||
Sbjct: 72 ttcctcagccctatc 86
