miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgtg 32
||||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctgtg 35
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 73 taaaagcacgaacagatcgataaacctctgcatcca 108
|||||||| ||| |||||||||||||||||||||||
Sbjct: 51 taaaagcatgaatagatcgataaacctctgcatcca 86
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 68 gatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 71 attaaaagcacgaacagatcgataaacctctgcatcca 108
|||||||||| |||||||||||||||||| ||||||||
Sbjct: 53 attaaaagcatgaacagatcgataaacctgtgcatcca 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctctt 26
|||||||||||||| |||||||||||
Sbjct: 4 tggaggcagcggttgatcgatctctt 29
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gaacagatcgataaacctctgcatcca 108
|||| ||||||||||||||||||||||
Sbjct: 63 gaaccgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 73 gatcgataaacctctgcatcca 94
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||| ||||||
Sbjct: 4 tggaggcagcggttcatcgatcttttcctg 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 cacgaacagatcgataaacctctgcatcca 108
||||||| ||||||||||||||||||||||
Sbjct: 60 cacgaaccgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 4 tggatgcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgtg 32
|||||||||||||||||||||| ||||||||
Sbjct: 4 tggaggcagcggttcatcgatcaattcctgtg 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 74 aaaagcacgaacagatcgataaacctctgcatcca 108
||||||| ||| ||||||||||||||||||||||
Sbjct: 55 aaaagcaagaatcgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 4 tggatgcagcggttcatcgatctgttcctg 33
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 109 gatcgataaacctctgcatcca 130
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 135 gatcgataaacctctgcatcca 156
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatcca 108
||||||||||||||||||||||
Sbjct: 136 gatcgataaacctctgcatcca 157
