miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 171 tggtgtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||||||
Sbjct: 123 tggtgtcgtcggaccaggcttcattcccc 151
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 171 tggtgtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||||||
Sbjct: 117 tggtgtcgtcggaccaggcttcattcccc 145
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||||
Sbjct: 105 gtgtcgtcggaccaggcttcattcccc 131
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||||
Sbjct: 91 gtgtcgtcggaccaggcttcattcccc 117
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||||
Sbjct: 102 gtgtcgtcggaccaggcttcattcccc 128
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 175 gtcgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||||
Sbjct: 96 gtcgtcggaccaggcttcattcccc 120
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 177 cgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattcccc 117
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 177 cgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattcccc 140
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 177 cgtcggaccaggcttcattcccc 199
|||||||||||||||||||||||
Sbjct: 94 cgtcggaccaggcttcattcccc 116
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||| ||||||||||||||||||||||
Sbjct: 82 gtgttgtcggaccaggcttcattcccc 108
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||| ||||||||||||||||||||||
Sbjct: 117 gtgttgtcggaccaggcttcattcccc 143
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 173 gtgtcgtcggaccaggcttcattcccc 199
|||| ||||||||||||||||||||||
Sbjct: 156 gtgttgtcggaccaggcttcattcccc 182
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 178 gtcggaccaggcttcattcccc 199
||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcccc 104
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 178 gtcggaccaggcttcattcccc 199
||||||||||||||||||||||
Sbjct: 72 gtcggaccaggcttcattcccc 93
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 178 gtcggaccaggcttcattcccc 199
||||||||||||||||||||||
Sbjct: 75 gtcggaccaggcttcattcccc 96
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 174 tgtcgtcggaccaggcttcattcccc 199
|||| |||||||||||||||||||||
Sbjct: 58 tgtcctcggaccaggcttcattcccc 83
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 178 gtcggaccaggcttcattcccc 199
||||||||||||||||||||||
Sbjct: 108 gtcggaccaggcttcattcccc 129
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 174 tgtcgtcggaccaggcttcattcccc 199
|||| |||||||||||||||||||||
Sbjct: 64 tgtcctcggaccaggcttcattcccc 89
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 178 gtcggaccaggcttcattcccc 199
||||||||||||||||||||||
Sbjct: 129 gtcggaccaggcttcattcccc 150
