miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46304_miR398:micropc
Length = 59
Score = 117 bits (59), Expect = 9e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 2 aggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 59
>46550_miR398:micropc
Length = 61
Score = 105 bits (53), Expect = 3e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 caggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 60
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 caggagcgacctgaaatcacatgtgggctgctcggcaacatttgttctcaggtcgcccct 60
Query: 61 g 61
|
Sbjct: 61 g 61
>45422_miR398:micropc
Length = 78
Score = 65.9 bits (33), Expect = 3e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 caggagcgacctgaaatcacatgtgggctgcac 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 caggagcgacctgaaatcacatgtgggctgcac 33
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 34 ggcaacatgtgttctcaggtcgcccctg 61
||||||||||||||||||||||||||||
Sbjct: 51 ggcaacatgtgttctcaggtcgcccctg 78
>46111_miR398:micropc
Length = 76
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 2 aggagcgacctgaaatcacatgtgggctgcac 33
||||||||||||||||||||||||||||||||
Sbjct: 1 aggagcgacctgaaatcacatgtgggctgcac 32
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ggcaacatgtgttctcaggtcgcccct 60
|||||||||||||||||||||||||||
Sbjct: 50 ggcaacatgtgttctcaggtcgcccct 76
>46116_miR398:micropc
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 34 ggcaacatgtgttctcaggtcgcccctg 61
||||||||||||||||||||||||||||
Sbjct: 50 ggcaacatgtgttctcaggtcgcccctg 77
>46303_miR398:micropc
Length = 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ggcaacatgtgttctcaggtcgcccct 60
|||||||||||||||||||||||||||
Sbjct: 49 ggcaacatgtgttctcaggtcgcccct 75
>46371_miR398:micropc
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccctg 61
|||||||||||||||||||||||
Sbjct: 55 catgtgttctcaggtcgcccctg 77
>46034_miR398:micropc
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccctg 61
|||||||||||||||||||||||
Sbjct: 55 catgtgttctcaggtcgcccctg 77
>45294_miR398:micropc
Length = 98
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccctg 61
|||||||||||||||||||||||
Sbjct: 76 catgtgttctcaggtcgcccctg 98
>46725_miR398:micropc
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccctg 61
||||||||||||||||||||||
Sbjct: 46 atgtgttctcaggtcgcccctg 67
>46690_miR398:micropc
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccct 60
||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccct 75
>46686_miR398:micropc
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccct 60
||||||||||||||||||||||
Sbjct: 75 catgtgttctcaggtcgcccct 96
>46604_miR398:micropc
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccctg 61
||||||||||||||||||||||
Sbjct: 46 atgtgttctcaggtcgcccctg 67
>46074_miR398:micropc
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccct 60
||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccct 75
>44891_miR398:micropc
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccctg 61
||||||||||||||||||||||
Sbjct: 68 atgtgttctcaggtcgcccctg 89
>46795_miR398:micropc
Length = 101
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tgtgttctcaggtcgcccctg 61
|||||||||||||||||||||
Sbjct: 81 tgtgttctcaggtcgcccctg 101
>46392_miR398:micropc
Length = 68
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tgtgttctcaggtcgcccctg 61
|||||||||||||||||||||
Sbjct: 48 tgtgttctcaggtcgcccctg 68
>46114_miR398:micropc
Length = 65
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccct 60
|||||||||||||||||||||
Sbjct: 45 atgtgttctcaggtcgcccct 65
>45920_miR398:micropc
Length = 104
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccc 59
|||||||||||||||||||||
Sbjct: 84 catgtgttctcaggtcgcccc 104
>45284_miR398:micropc
Length = 104
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccc 59
|||||||||||||||||||||
Sbjct: 84 catgtgttctcaggtcgcccc 104
>45192_miR398:micropc
Length = 65
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccct 60
|||||||||||||||||||||
Sbjct: 45 atgtgttctcaggtcgcccct 65
>45095_miR398:micropc
Length = 87
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 atgtgttctcaggtcgcccct 60
|||||||||||||||||||||
Sbjct: 67 atgtgttctcaggtcgcccct 87
>46367_miR398:micropc
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccctg 61
||||||||||||||||||||
Sbjct: 54 gtgttctcaggtcgcccctg 73
>45930_miR398:micropc
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccctg 61
||||||||||||||||||||
Sbjct: 44 gtgttctcaggtcgcccctg 63
>45898_miR398:micropc
Length = 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 tgtgttctcaggtcgcccct 60
||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcgcccct 66
>45694_miR398:micropc
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 tgtgttctcaggtcgcccct 60
||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcgcccct 99
>45087_miR398:micropc
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccctg 61
||||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccctg 84
>46124_miR398:micropc
Length = 97
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccctg 61
|||||||||||||||| ||||||
Sbjct: 75 catgtgttctcaggtcacccctg 97
>45384_miR398:micropc
Length = 83
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccct 60
|||||||||||||||||||
Sbjct: 65 gtgttctcaggtcgcccct 83
>45380_miR398:micropc
Length = 108
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 39 catgtgttctcaggtcgcccctg 61
|||||||||||||||| ||||||
Sbjct: 86 catgtgttctcaggtcacccctg 108
>45163_miR398:micropc
Length = 71
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccct 60
|||||||||||||||||||
Sbjct: 53 gtgttctcaggtcgcccct 71
>44941_miR398:micropc
Length = 61
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 gtgttctcaggtcgcccct 60
|||||||||||||||||||
Sbjct: 43 gtgttctcaggtcgcccct 61
