miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
          alba
          Length = 81

 Score =  121 bits (61), Expect = 1e-27
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  caggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 70

           
Query: 61 g 61
          |
Sbjct: 71 g 71

>RF00695;MIR398;CU225561.1/49-129 80863:Populus tremula x Populus
          alba
          Length = 81

 Score =  105 bits (53), Expect = 6e-23
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  caggagcgacctgaaatcacatgtgggctgcacggcaacatgtgttctcaggtcgcccct 60
          ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 11 caggagcgacctgaaatcacatgtgggctgctcggcaacatttgttctcaggtcgcccct 70

           
Query: 61 g 61
          |
Sbjct: 71 g 71

>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
          trichocarpa
          Length = 86

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 39 catgtgttctcaggtcgcccctg 61
          |||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctg 76

>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 39  catgtgttctcaggtcgcccctg 61
           |||||||||||||||||||||||
Sbjct: 106 catgtgttctcaggtcgcccctg 128

>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
          (barrel medic)
          Length = 97

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 39 catgtgttctcaggtcgcccctg 61
          |||||||||||||||||||||||
Sbjct: 65 catgtgttctcaggtcgcccctg 87

>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 39 catgtgttctcaggtcgcccctg 61
          |||||||||||||||||||||||
Sbjct: 58 catgtgttctcaggtcgcccctg 80

>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
          Length = 128

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 41  tgtgttctcaggtcgcccctg 61
           |||||||||||||||||||||
Sbjct: 98  tgtgttctcaggtcgcccctg 118

>RF00695;MIR398;EU940707.1/90-217 4577:Zea mays
          Length = 128

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 39  catgtgttctcaggtcgcccc 59
           |||||||||||||||||||||
Sbjct: 96  catgtgttctcaggtcgcccc 116

>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
           (sorghum)
          Length = 129

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 39  catgtgttctcaggtcgcccc 59
           |||||||||||||||||||||
Sbjct: 97  catgtgttctcaggtcgcccc 117

>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
          Group
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 41 tgtgttctcaggtcgcccctg 61
          |||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctg 78