miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51347_ppe-miR408:pmrd
Length = 105
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 agacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 agacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggc 67
Query: 61 tctactcatgcactgcctcttccctggct 89
|||||||||||||||||||||||||||||
Sbjct: 68 tctactcatgcactgcctcttccctggct 96
>51762_ptc-miR408:pmrd
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 tgttgtggctctactcatgcactgcctcttccctggct 89
|||| ||||||||| |||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>54892_vvi-miR408:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 49 agctgttgtggctctactcatgcactgcctcttccctggct 89
||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 58 agctgtttttgctctacccatgcactgcctcttccctggct 98
>54389_rco-miR408:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 51 ctgttgtggctctactcatgcactgcctcttccctggct 89
||||| ||||||||| | |||||||||||||||||||||
Sbjct: 73 ctgttttggctctacccctgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 52 tgttgtggctctactcatgcactgcctcttccctg 86
|||| ||||||||| ||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 51 ctgttgtggctctactcatgcactgcctcttccctggct 89
||||| || |||||| |||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggct 5
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 agacagggaacaggtagagcatggatggagtt 32
|||||||||||| | ||||||||||| |||||
Sbjct: 95 agacagggaacaagcagagcatggattgagtt 64
>47031_ath-miR408:pmrd
Length = 218
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 51 ctgttgtggctctactcatgcactgcctcttccctggct 89
||||| || |||||| |||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggct 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 agacagggaacaggtagagcatggatggagtt 32
|||||||||||| | ||||||||||| |||||
Sbjct: 51 agacagggaacaagcagagcatggattgagtt 82
>51397_ppt-miR408b:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 ctcatgcactgcctcttccctggct 89
|||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggct 114
>48428_cpt-miR408:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 catgcactgcctcttccctggct 89
|||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggct 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 agacagggaacaggtagagcatggatgga 29
|||| ||||||||| ||||||||||||||
Sbjct: 8 agacggggaacaggcagagcatggatgga 36
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 catgcactgcctcttccctggct 89
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 atgcactgcctcttccctggct 89
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 atgcactgcctcttccctggct 89
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>48584_gma-miR408a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 51 ctgttgtggctctactcatgcactgcctcttccctggc 88
||||||||||| |||||||||||||| |||||||||
Sbjct: 83 ctgttgtggctacgctcatgcactgcctgttccctggc 120
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>54690_tae-miR408:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157
>54649_sof-miR408d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggct 197
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgcactgcctcttccctggct 89
|||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 catgcactgcctcttccctgg 87
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
