miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 49
Query: 61 ggtctcatatgggcagtctccttggct 87
|||||||||||||||||||||||||||
Sbjct: 48 ggtctcatatgggcagtctccttggct 22
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 69
Query: 61 ggtctcatatgggcagtctccttggct 87
|||||||||||||||||||||||||||
Sbjct: 70 ggtctcatatgggcagtctccttggct 96
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 111 bits (56), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 60
|||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||
Sbjct: 106 agccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgagt 47
Query: 61 ggtctcatatgggcagtctccttggct 87
|||||| |||||||||||||||||||
Sbjct: 46 ggtctc--atgggcagtctccttggct 22
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 111 bits (56), Expect = 1e-24
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctagt 60
|||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||
Sbjct: 10 agccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgagt 69
Query: 61 ggtctcatatgggcagtctccttggct 87
|||||| |||||||||||||||||||
Sbjct: 70 ggtctc--atgggcagtctccttggct 94
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcctc 27
||||||||||||||||||||| |||||
Sbjct: 120 agccaaggatgacttgcctatttcctc 94
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcctc 27
||||||||||||||||||||| |||||
Sbjct: 131 agccaaggatgacttgcctatttcctc 105
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaa 43
||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 107 agccaaggatgacttgcctgtgtcctccctgaaggattagcaa 65
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcctc 27
||||||||||||||||||||| |||||
Sbjct: 17 agccaaggatgacttgcctatttcctc 43
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcctc 27
||||||||||||||||||||| |||||
Sbjct: 14 agccaaggatgacttgcctatttcctc 40
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcctctctaaaggatcagcaa 43
||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 11 agccaaggatgacttgcctgtgtcctccctgaaggattagcaa 53
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 agccaaggatgacttgcctatatcct 26
||||||||||||||||||||| ||||
Sbjct: 106 agccaaggatgacttgcctatgtcct 81
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcct 26
||||||||||||||||||||| ||||
Sbjct: 1 agccaaggatgacttgcctatgtcct 26
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agccaaggatgacttgcctatatcct 26
||||||||||||||||||||| ||||
Sbjct: 1 agccaaggatgacttgcctatgtcct 26
