miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44917_miR482:micropc
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ggaatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgttttctttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgttttctttcctt 60
Query: 61 ctttcctactcctcccattcc 81
|||||||||||||||||||||
Sbjct: 61 ctttcctactcctcccattcc 81
>45951_miR482:micropc
Length = 81
Score = 111 bits (56), Expect = 8e-26
Identities = 75/81 (92%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 3 aatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgt----tttctttcc 58
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1 aatgggaagataggaaagaaccaaagtgttgtcagaaacatctttgttttctttctttct 60
Query: 59 ttctttcctactcctcccatt 79
|||||||||||||||||||||
Sbjct: 61 ttctttcctactcctcccatt 81
>45015_miR482:micropc
Length = 81
Score = 111 bits (56), Expect = 8e-26
Identities = 75/81 (92%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 3 aatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgt----tttctttcc 58
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1 aatgggaagataggaaagaaccaaagtgttgtcagaaacatctttgttttctttctttct 60
Query: 59 ttctttcctactcctcccatt 79
|||||||||||||||||||||
Sbjct: 61 ttctttcctactcctcccatt 81
>45979_miR482:micropc
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 ttccttctttcctactcctcccattcc 81
||||||||| |||||||||||||||||
Sbjct: 45 ttccttcttgcctactcctcccattcc 71
>45881_miR482:micropc
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 ttccttctttcctactcctcccattcc 81
||||||||| |||||||||||||||||
Sbjct: 45 ttccttcttgcctactcctcccattcc 71
>45229_miR482:micropc
Length = 66
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tctttcctactcctcccattcc 81
||||||||||||||||||||||
Sbjct: 45 tctttcctactcctcccattcc 66
>46769_miR482:micropc
Length = 67
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 ttccttctttcctactcctcccatt 79
||||||||| |||||||||||||||
Sbjct: 43 ttccttcttgcctactcctcccatt 67
>46503_miR482:micropc
Length = 67
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 ttccttctttcctactcctcccatt 79
||||||||| |||||||||||||||
Sbjct: 43 ttccttcttgcctactcctcccatt 67
>46388_miR482:micropc
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 ccttctttcctactcctcccattcc 81
||||||| |||||||||||||||||
Sbjct: 47 ccttcttgcctactcctcccattcc 71
>45511_miR482:micropc
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 ccttctttcctactcctcccattcc 81
||||||| |||||||||||||||||
Sbjct: 47 ccttcttgcctactcctcccattcc 71
>46004_miR482:micropc
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 tctttcctactcctcccatt 79
||||||||||||||||||||
Sbjct: 43 tctttcctactcctcccatt 62
>46297_miR472:micropc
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctttcctactcctcccat 78
|||||||||||||||||||
Sbjct: 64 tctttcctactcctcccat 82
>46001_miR482:micropc
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59 ttctttcctactcctcccattcc 81
|||||||||| ||||||||||||
Sbjct: 52 ttctttcctagtcctcccattcc 74
>45290_miR482:micropc
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 tctttcctactcctcccat 78
|||||||||||||||||||
Sbjct: 60 tctttcctactcctcccat 78
