miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 125 bits (63), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 1 cagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgcat 60
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 11 cagggtaagatctctattggcaggaaaccattacttagatctttgcatctctttatgcat 70
Query: 61 tgattt---gtagtgagttctctgccaaaggagatttgccc 98
|| ||| ||||||||| |||||||||||||||||||||
Sbjct: 71 tgcttttaattagtgagttatctgccaaaggagatttgccc 111
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 64 tttgtagtgagttctctgccaaaggagatttgcccgg 100
||||| ||||| |||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccgg 108
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttctctgccaaaggagatttgccc 98
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgcccgg 100
||||||||||||||||||||||||
Sbjct: 83 ctctgccaaaggagatttgcccgg 106
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tctctgccaaaggagatttgccc 98
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 69 agtgagttctctgccaaaggagatttgccc 98
|||| |||| ||||||||||||||||||||
Sbjct: 76 agtgtgttccctgccaaaggagatttgccc 105
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgcccgg 100
||||||||||||||||||||||
Sbjct: 63 ctgccaaaggagatttgcccgg 84
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ctgccaaaggagatttgcccgg 100
||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccgg 99
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ctctgccaaaggagatttgccc 98
||||||||||||||||||||||
Sbjct: 68 ctctgccaaaggagatttgccc 89
