miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
deltoides
Length = 120
Score = 143 bits (72), Expect = 5e-34
Identities = 95/102 (93%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatgaaatcctacattttgtgctcttaaactgttaccaaccct 60
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgttaccaaccct 70
Query: 61 ttat---ccatggcatcatttcaccagcgctgcattcaatca 99
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 71 ttatggggcatggcatcatttcaccagcgctgcattcaatca 112
>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 atcatttcaccagcgctgcattcaa 96
|||||||||||||||||||||||||
Sbjct: 79 atcatttcaccagcgctgcattcaa 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 cattgagtgcagcgttgatgaaat 25
||||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaat 35
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatgaaa 24
||||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatgaaa 34
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatgaa 23
|||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatga 22
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 attgagtgcagcgttgatgaaatcct 28
||||||||||||||||||||| ||||
Sbjct: 13 attgagtgcagcgttgatgaagtcct 38
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatga 22
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
