miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54402_sbi-miR157:pmrd
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 62
Query: 61 cgtgctcacttctctttcggtc 82
||||||||||||||||||||||
Sbjct: 63 cgtgctcacttctctttcggtc 84
>54393_sbi-miR156a:pmrd
Length = 84
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 61
Query: 61 cgtgctcacttctctttc 78
||||||||||||||||||
Sbjct: 62 cgtgctcacttctctttc 79
>54923_zma-miR156n:pmrd
Length = 84
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
|||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 2 gacagaagagagtgagcacacggcgcgacgaacgacatagcatgtatgccgtcctcgccg 61
Query: 61 cgtgctcacttctctttc 78
||||||||||||||||||
Sbjct: 62 cgtgctcacttctctttc 79
>54914_zma-miR156d:pmrd
Length = 119
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
|||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 17 gacagaagagagtgagcacacggcgcgacgaacgacatagcatgtatgccgtcctcgccg 76
Query: 61 cgtgctcacttctctttc 78
||||||||||||||||||
Sbjct: 77 cgtgctcacttctctttc 94
>48804_osa-miR156d:pmrd
Length = 129
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
||||||||||||||||||||||||| || | |||||||| || ||| |||||||||||
Sbjct: 21 gacagaagagagtgagcacacggcgtgatggccggcataaaatctatcccgtcctcgccg 80
Query: 61 cgtgctcacttctctttc 78
|||||||||| |||||||
Sbjct: 81 cgtgctcactcctctttc 98
>48813_osa-miR156m:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcg 27
|||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacacggcgcg 28
>48810_osa-miR156j:pmrd
Length = 165
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcg 27
|||||||||||||||||||||||||||
Sbjct: 43 gacagaagagagtgagcacacggcgcg 69
>48808_osa-miR156h:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcg 27
|||||||||||||||||||||||||||
Sbjct: 10 gacagaagagagtgagcacacggcgcg 36
>54921_zma-miR156k:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 6e-08
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
|||||||||||| |||||| |||||| ||| |||||| | | ||| ||||| |||||
Sbjct: 22 gacagaagagagcgagcacctggcgcggcgaccggcatggaacgcatgccgtccccgccg 81
Query: 61 cgtgctcacttctctttc 78
||||||| ||||||||||
Sbjct: 82 cgtgctcgcttctctttc 99
>54919_zma-miR156i:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 14 gacagaagagagtgagcacacggc 37
>54918_zma-miR156h:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 21 gacagaagagagtgagcacacggc 44
>54915_zma-miR156e:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 21 gacagaagagagtgagcacacggc 44
>54400_sbi-miR156h:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>54399_sbi-miR156g:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacggc 26
>48809_osa-miR156i:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacacggc 27
>48805_osa-miR156e:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggc 24
||||||||||||||||||||||||
Sbjct: 11 gacagaagagagtgagcacacggc 34
>54569_smo-miR156a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacgg 23
|||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacgg 34
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacacg 23
>54397_sbi-miR156e:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 1e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgccg 60
|||||||||||| |||||| ||||||| || |||||| | ||| ||||| |||||
Sbjct: 22 gacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgccg 81
Query: 61 cgtgctcacttctctttc 78
||||||| ||||||||||
Sbjct: 82 cgtgctcgcttctctttc 99
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 8 gacagaagagagtgagcacacg 29
>48801_osa-miR156a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 8 gacagaagagagtgagcacacg 29
>48491_ghr-miR156d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 10 gacagaagagagtgagcacacg 31
>48425_cpt-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacacg 22
||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacacg 33
>54924_zma-miR156o:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>54922_zma-miR156m:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>54913_zma-miR156c:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 22 gacagaagagagtgagcacac 42
>54912_zma-miR156b:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 22 gacagaagagagtgagcacac 42
>54911_zma-miR156a:pmrd
Length = 152
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 19 gacagaagagagtgagcacac 39
>54768_vvi-miR156c:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>54767_vvi-miR156b:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>54401_sbi-miR156i:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacac 24
>54395_sbi-miR156c:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>54394_sbi-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacac 24
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 92 gacagaagagagtgagcacac 72
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 9 gacagaagagagtgagcacac 29
>51596_ptc-miR156f:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51595_ptc-miR156e:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51594_ptc-miR156d:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51593_ptc-miR156c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51592_ptc-miR156b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51591_ptc-miR156a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>51354_ppr-miR156:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacac 23
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 88 gacagaagagagtgagcacac 68
>48807_osa-miR156g:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 5 gacagaagagagtgagcacac 25
>48806_osa-miR156f:pmrd
Length = 186
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 5 gacagaagagagtgagcacac 25
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 gcgtgctcacttctctttc 78
|||||||||||||||||||
Sbjct: 160 gcgtgctcacttctctttc 178
>48803_osa-miR156c:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 30 gacagaagagagtgagcacac 50
>48802_osa-miR156b:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 44 gacagaagagagtgagcacac 64
>48795_oru-miR156:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacac 23
>48652_hvv-miR156a:pmrd
Length = 394
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>48489_ghr-miR156b:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacac 24
>48488_ghr-miR156a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 10 gacagaagagagtgagcacac 30
>48336_bna-miR156a:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcacac 22
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 95 gacagaagagagtgagcacac 75
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 7 gacagaagagagtgagcacac 27
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacac 24
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 4 gacagaagagagtgagcacac 24
>46916_ath-miR156g:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacac 32
>46915_ath-miR156f:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 22 gacagaagagagtgagcacac 42
>46914_ath-miR156e:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 8 gacagaagagagtgagcacac 28
>46913_ath-miR156d:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 19 gacagaagagagtgagcacac 39
>46912_ath-miR156c:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 13 gacagaagagagtgagcacac 33
>46910_ath-miR156a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcacac 21
|||||||||||||||||||||
Sbjct: 22 gacagaagagagtgagcacac 42
